Nov 14th, 2017 Ontology Working Group Meeting: Difference between revisions

From Planteome.org
Jump to navigation Jump to search
Line 27: Line 27:


* Proposed  
* Proposed  
** Rename grain aroma trait (TO:0000087)
** Rename grain aroma trait (TO:0000087)- ''done''
** Move to be is_a grain quality trait TO:0000162
** Move to be is_a grain quality trait TO:0000162 - ''done''
** Make it part_of: fruit flavor trait (TO:0002694)
** Make it part_of: fruit flavor trait (TO:0002694) - ''done''


* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma


==Next Release==
* Try for December befoer PAG


==Food Ontology meeting==
* Involvement of industry and tech, informatics
* Full spectrum of production
* Agvoice company Bruce Rasa http://www.agvoiceglobal.com/- Alexa technology,


December Release
* Food processing traits
 
* Organoleptic traits- Integrate into TO at a high level?  
 
 
Food Ontology meeting:
Involvement of industry and tech, informatics
Full spectrum of production
Agvoice company Bruce Rasa http://www.agvoiceglobal.com/
Alexa technology,
 
Food processing traits
 
Organoleptic traits
Integrate into TO at a high level?  
 
 
 
Next IC Foods meeting in March in Dublin, Ireland
 
http://foodontology.github.io/foodon/
 
https://github.com/FoodOntology/foodon
 
 
Ask Matthew lange about coming to future meeting
 
Phenoharmonis planned for mid-May 2018
 
 


* Next IC Foods meeting in March in Dublin, Ireland
** http://foodontology.github.io/foodon/
** https://github.com/FoodOntology/foodon


* Ask Matthew Lange about coming to future meeting
* Phenoharmonis planned for mid-May 2018


== Upcoming Events ==
== Upcoming Events ==

Revision as of 20:33, 10 February 2018

  • Date: Tuesday Nov 14th, 2017
  • Time: 8:15am PST (GMT-8)
  • Connection details:

Topic: Planteome Ontology Working Group Meeting Time: Nov 14, 2017 8:15 AM PST

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533

Agenda and Notes

  • Update on Changes to PECO- in progress

Presentation of PhenoArche data management by INRA

  • Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
  • EA and MAL may be in Peru during the week - Lima is on eastern time zone

Request for Revisions to aroma TO:0000087

  • From PJ; See tracker (#424)
  • Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
  • aroma (TO:0000087) has dual parentage:
    • is_a fruit flavor trait (TO:0002694)
    • is_a seed composition quality trait (TO:0000488)
      • This structure makes no sense.
  • Proposed
    • Rename grain aroma trait (TO:0000087)- done
    • Move to be is_a grain quality trait TO:0000162 - done
    • Make it part_of: fruit flavor trait (TO:0002694) - done
  • Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
  • Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma

Next Release

  • Try for December befoer PAG

Food Ontology meeting

  • Food processing traits
  • Organoleptic traits- Integrate into TO at a high level?
  • Ask Matthew Lange about coming to future meeting
  • Phenoharmonis planned for mid-May 2018

Upcoming Events

  • Phenoscape Hackathon in Dec- LC and AM will attend
  • Plant and Animal Genome meeting January 2018
  • Phenoharmonis planned for mid-May 2018
  • ICBO 2018- in Corvallis, August 6-10th

Next meeting: Dec 5th