Nov 14th, 2017 Ontology Working Group Meeting

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  • Date: Tuesday Nov 14th, 2017
  • Time: 8:15am PST (GMT-8)
  • Connection details:

Topic: Planteome Ontology Working Group Meeting Time: Nov 14, 2017 8:15 AM PST

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533

Agenda and Notes

  • Update on Changes to PECO- in progress

Presentation of PhenoArche data management by INRA

  • Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
  • EA and MAL may be in Peru during the week - Lima is on eastern time zone

Request for Revisions to aroma TO:0000087

  • From PJ; See tracker (#424)
  • Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
  • aroma (TO:0000087) has dual parentage:
    • is_a fruit flavor trait (TO:0002694)
    • is_a seed composition quality trait (TO:0000488)
      • This structure makes no sense.
  • Proposed
    • Rename grain aroma trait (TO:0000087)- done
    • Move to be is_a grain quality trait TO:0000162 - done
    • Make it part_of: fruit flavor trait (TO:0002694) - done
  • Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
  • Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
  • Aroma grouping term?, where to put it?
  • don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain
  • Aroma is a physical object quality in PATO- PATO:0000058

Next Release

  • Try for December befoer PAG

Food Ontology meeting

  • Food processing traits
  • Organoleptic traits- Integrate into TO at a high level?
  • Ask Matthew Lange about coming to future meeting
  • Phenoharmonis planned for mid-May 2018

Upcoming Events

  • Phenoscape Hackathon in Dec- LC and AM will attend
  • Plant and Animal Genome meeting January 2018
  • Phenoharmonis planned for mid-May 2018
  • ICBO 2018- in Corvallis, August 6-10th

Next meeting: Dec 5th