Nov 14th, 2017 Ontology Working Group Meeting: Difference between revisions

From Planteome.org
Jump to navigation Jump to search
Line 12: Line 12:


=Agenda and Notes=   
=Agenda and Notes=   
* Update on Changes to PECO
* Update on Changes to PECO- ''in progress''


* Presentation of PhenoArche data management by INRA: Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
==Presentation of PhenoArche data management by INRA==
* Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
* EA and MAL may be in Peru during the week - Lima is on eastern time zone
* EA and MAL may be in Peru during the week - Lima is on eastern time zone


* Request for Revisions to aroma TO:0000087 (#424) From PJ
== Request for Revisions to aroma TO:0000087==
** http://browser.planteome.org/amigo/term/TO:0000087
* From PJ; See tracker ([https://github.com/Planteome/plant-trait-ontology/issues/424 #424])
* Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
* Current definition: aroma ([http://dev.planteome.org/amigo/term/TO:0000087 TO:0000087]): The aroma of the cooked/uncooked grains.
** Currently aroma (TO:0000087) has dual parentage:
* aroma (TO:0000087) has dual parentage:
** is_a fruit flavor trait (TO:0002694)
** is_a fruit flavor trait (TO:0002694)
** is_a seed composition quality trait (TO:0000488)
** is_a seed composition quality trait (TO:0000488)
*** ''This structure makes no sense.''   
*** ''This structure makes no sense.''   


* Proposed
** Rename grain aroma trait (TO:0000087)
** Move to be is_a grain quality trait TO:0000162
** Make it part_of: fruit flavor trait (TO:0002694)


Proposed
* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
Rename grain aroma trait (TO:0000087)
* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
Move to be is_a grain quality trait TO:0000162
 
Make it part_of:
fruit flavor trait (TO:0002694)
 
Comment from PJ:  
Needs repositions as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
 
Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma





Revision as of 20:30, 10 February 2018

  • Date: Tuesday Nov 14th, 2017
  • Time: 8:15am PST (GMT-8)
  • Connection details:

Topic: Planteome Ontology Working Group Meeting Time: Nov 14, 2017 8:15 AM PST

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533

Agenda and Notes

  • Update on Changes to PECO- in progress

Presentation of PhenoArche data management by INRA

  • Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
  • EA and MAL may be in Peru during the week - Lima is on eastern time zone

Request for Revisions to aroma TO:0000087

  • From PJ; See tracker (#424)
  • Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
  • aroma (TO:0000087) has dual parentage:
    • is_a fruit flavor trait (TO:0002694)
    • is_a seed composition quality trait (TO:0000488)
      • This structure makes no sense.
  • Proposed
    • Rename grain aroma trait (TO:0000087)
    • Move to be is_a grain quality trait TO:0000162
    • Make it part_of: fruit flavor trait (TO:0002694)
  • Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
  • Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma


December Release


Food Ontology meeting: Involvement of industry and tech, informatics

Full spectrum of production

Agvoice company Bruce Rasa http://www.agvoiceglobal.com/ Alexa technology,

Food processing traits

Organoleptic traits Integrate into TO at a high level?


Next IC Foods meeting in March in Dublin, Ireland

http://foodontology.github.io/foodon/

https://github.com/FoodOntology/foodon


Ask Matthew lange about coming to future meeting

Phenoharmonis planned for mid-May 2018



Upcoming Events

  • Phenoscape Hackathon in Dec- LC and AM will attend
  • Plant and Animal Genome meeting January 2018
  • Phenoharmonis planned for mid-May 2018
  • ICBO 2018- in Corvallis, August 6-10th

Next meeting: Dec 5th