Difference between revisions of "Planteome Curator workshop Fall 2015"
From Planteome.org
(→Goals of the meeting: Strategic planning, Ontology Curation, and Protege Training) |
(→Goals of the meeting: Strategic planning, Ontology Curation, and Protege Training) |
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** PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, | ** PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, | ||
| − | '''2. Protege Training''' | + | '''2. GitHub and Protege Training''' |
* Lead by Chris Mungall, Marie-Angelique can assist | * Lead by Chris Mungall, Marie-Angelique can assist | ||
| − | * Goal: Train curators in using the Protege software | + | * Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation |
* Who: Ontology Curators | * Who: Ontology Curators | ||
| Line 16: | Line 16: | ||
** Which of the CO curators are ready to be involved in ontology development?? | ** Which of the CO curators are ready to be involved in ontology development?? | ||
| − | '''3. Ontology Curation''' | + | '''3. Ontology Curation and Data Annotation''' |
'''* PJ's vision: Distributed ontology development and maintenance''' | '''* PJ's vision: Distributed ontology development and maintenance''' | ||
* Wants a group of ontology developers to meet face-to-face | * Wants a group of ontology developers to meet face-to-face | ||
| − | * Get curators together for some hands-on development | + | * Get curators together for some hands-on development and Data Annotation |
* Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group? | * Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group? | ||
Revision as of 22:08, 16 September 2015
Discussions from 9-15-15 Ontology WG meeting:
Goals of the meeting: Strategic planning, Ontology Curation, and Protege Training
- Who should attend: Planteome Ontology team: developers and software team and experts from various crops
1. Strategic Planning
- Goal: Form a strategic plan on how to build each ontology and how they fit together
- Who: Core Ontology Working Group:
- PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG,
2. GitHub and Protege Training
- Lead by Chris Mungall, Marie-Angelique can assist
- Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation
- Who: Ontology Curators
- Planteome team: LC, AM, MAL, NYBG postdoc?, GG postdoc?, OSU undergrad students- Megan and Ethan
- Which of the CO curators are ready to be involved in ontology development??
3. Ontology Curation and Data Annotation * PJ's vision: Distributed ontology development and maintenance
- Wants a group of ontology developers to meet face-to-face
- Get curators together for some hands-on development and Data Annotation
- Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group?
- legumes- soybean, Medicago, peanut, lentils (?)
- tubers- cassava, potato
- rice
- maize- curators from CIMMYT- Rosemary?
- wheat- curators from CIMMYT- ??
Logistics:
- Planned to be in Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive
- Dates: October-November- "2-3 days(core), with a few days more for outside ontologists"
- Doodle poll will be circulated (LC)
- Barry: "Any 3 days in Nov 3-16 would work (this includes 2 half days for travel), preferred in Nov 4-15"
Dates of OSU Home Games: http://www.osubeavers.com/SportSelect.dbml?SPSID=750125&SPID=127145
