Ontology Working Group Meeting, Tuesday April 28th, 2015

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Planteome Ontology Working Group Meeting

  • Time: Apr 28, 2015 8:30 AM (GMT-7:00) Pacific Time (US and Canada)
  • Connection: Join from PC, Mac, iOS or Android: https://zoom.us/j/666739728

Agenda:

Who: LC, PJ, EA, LV, CM, DWS

Updates from CO team

  • LV has been progressing on several crop trait dictionaries, working with the plant breeders:
    • cowpea TD - discussing with the users, waiting for feedback
    • pigeon pea TD- Training was done with the breeders at the BMS, requested more traits, added 12 new

Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([1]). Julian is at CIMMYT, deals with the data standards for the BMS.

  • EA and LV are going to CIMMYT for all next week to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc
  • Also will be working on better guidelines to fill in the TDs
  • PJ Question: Are there already vocabularies in place to annotate the germplasm/ GWAS datasets, etc. Is there a list of traits?. CIMMYT researchers are part of [ TCAP project.
    • rice- no news from RH

Updates from OSU

  • Curator position: Interviews starting this week


Progress on transition to Github

  • Questions from CM:
  • Where to link the CO trait definitions to? - mapped to Gramene right now. Need annotations

Updates on Amigo 2.0

See link: dev.planteome.org

Possible working meeting in Montpellier July 1,2?

Next meeting date?