Ontology Working Group Meeting, Tuesday April 28th, 2015: Difference between revisions
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** cowpea TD - discussing with the users, waiting for feedback | ** cowpea TD - discussing with the users, waiting for feedback | ||
** pigeon pea TD- Training was done with the breeders at the [https://www.integratedbreeding.net/15/breeding-management-system BMS], requested more traits, added 12 new, submitted revisions to Preasad, then it will be uploaded. Done offline, via email and dropbox | ** pigeon pea TD- Training was done with the breeders at the [https://www.integratedbreeding.net/15/breeding-management-system BMS], requested more traits, added 12 new, submitted revisions to Preasad, then it will be uploaded. Done offline, via email and dropbox | ||
** Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([https://www.integratedbreeding.net/8/about-us/governance-management]). Julian is at CIMMYT, deals with the data standards for the BMS. | ** rice- no news from RH | ||
Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([https://www.integratedbreeding.net/8/about-us/governance-management]). Julian is at CIMMYT, deals with the data standards for the BMS. | |||
* EA and LV are going to CIMMYT for all next week (May 3-8th?) to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc | * EA and LV are going to CIMMYT for all next week (May 3-8th?) to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc | ||
* Also will be working on better guidelines to fill in the TDs | * Also will be working on better guidelines to fill in the TDs | ||
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* Link to [https://www.integratedbreeding.net/132/communities/genomics-crop-info/crop-information Crop Information & Genomics page] | * Link to [https://www.integratedbreeding.net/132/communities/genomics-crop-info/crop-information Crop Information & Genomics page] | ||
* Genebank staff will be gone, will be meeting with Rosemanry and Kate: their role is the harmonization of the metadata | * Genebank staff will be gone, will be meeting with Rosemanry and Kate: their role is the harmonization of the metadata | ||
* CIMMYT is implementing the GRIN Global system: [https://npgsweb.ars-grin.gov/gringlobal/descriptors.aspx] | * CIMMYT is implementing the GRIN Global system: [https://npgsweb.ars-grin.gov/gringlobal/descriptors.aspx] | ||
=== Updates from OSU=== | === Updates from OSU=== |
Revision as of 21:31, 28 April 2015
Planteome Ontology Working Group Meeting
- Time: Apr 28, 2015 8:30 AM (GMT-7:00) Pacific Time (US and Canada)
- Connection: Join from PC, Mac, iOS or Android: https://zoom.us/j/666739728
Agenda:
Who: LC, PJ, EA, LV, CM, DWS
Updates from CO team
- LV has been progressing on several crop trait dictionaries, working with the plant breeders:
- cowpea TD - discussing with the users, waiting for feedback
- pigeon pea TD- Training was done with the breeders at the BMS, requested more traits, added 12 new, submitted revisions to Preasad, then it will be uploaded. Done offline, via email and dropbox
- rice- no news from RH
Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([1]). Julian is at CIMMYT, deals with the data standards for the BMS.
- EA and LV are going to CIMMYT for all next week (May 3-8th?) to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc
- Also will be working on better guidelines to fill in the TDs
PJ Question: Are there already vocabularies in place to annotate the germplasm/GWAS datasets, etc? Is there a list of traits that we can get to match with the TDs and the ref TO?. CIMMYT researchers are part of TCAP/maizeCAP projects? How can we address the needs for the top priority traits that are needed.
- Link to Crop Information & Genomics page
- Genebank staff will be gone, will be meeting with Rosemanry and Kate: their role is the harmonization of the metadata
- CIMMYT is implementing the GRIN Global system: [2]
Updates from OSU
- Curator position: Interviews starting this week
Progress on transition to Github
- See: https://github.com/Planteome
- created repos for CGIAR rice, maize, wheat and cassava
- Will remove from SVN
- Questions from CM:
- Where to link the CO trait definitions to? - mapped to Gramene right now. Need annotations
Updates on Amigo 2.0
See link: dev.planteome.org