Ontology Working Group Meeting, Tuesday April 28th, 2015: Difference between revisions

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''PJ Question: Are there already vocabularies in place to annotate the germplasm/GWAS datasets, etc?  Is there a list of traits that we can get to match with the TDs and the ref TO?. CIMMYT researchers are part of TCAP/maizeCAP projects?  How can we address the needs for the top priority traits that are needed.''
''PJ Question: Are there already vocabularies in place to annotate the germplasm/GWAS datasets, etc?  Is there a list of traits that we can get to match with the TDs and the ref TO?. CIMMYT researchers are part of TCAP/maizeCAP projects?  How can we address the needs for the top priority traits that are needed.''
* Link to [https://www.integratedbreeding.net/132/communities/genomics-crop-info/crop-information Crop Information & Genomics page]


* Genebank staff will be gone, will be meeting with Rosemanry and Kate:
* Genebank staff will be gone, will be meeting with Rosemanry and Kate:
* CIMMYT is implementing the GRIN Global system: [https://npgsweb.ars-grin.gov/gringlobal/descriptors.aspx]
* CIMMYT is implementing the GRIN Global system: [https://npgsweb.ars-grin.gov/gringlobal/descriptors.aspx]


Revision as of 21:29, 28 April 2015

Planteome Ontology Working Group Meeting

  • Time: Apr 28, 2015 8:30 AM (GMT-7:00) Pacific Time (US and Canada)
  • Connection: Join from PC, Mac, iOS or Android: https://zoom.us/j/666739728

Agenda:

Who: LC, PJ, EA, LV, CM, DWS

Updates from CO team

  • LV has been progressing on several crop trait dictionaries, working with the plant breeders:
    • cowpea TD - discussing with the users, waiting for feedback
    • pigeon pea TD- Training was done with the breeders at the BMS, requested more traits, added 12 new, submitted revisions to Preasad, then it will be uploaded. Done offline, via email and dropbox
    • Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([1]). Julian is at CIMMYT, deals with the data standards for the BMS.
  • EA and LV are going to CIMMYT for all next week (May 3-8th?) to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc
  • Also will be working on better guidelines to fill in the TDs

PJ Question: Are there already vocabularies in place to annotate the germplasm/GWAS datasets, etc? Is there a list of traits that we can get to match with the TDs and the ref TO?. CIMMYT researchers are part of TCAP/maizeCAP projects? How can we address the needs for the top priority traits that are needed.


  • Genebank staff will be gone, will be meeting with Rosemanry and Kate:
  • CIMMYT is implementing the GRIN Global system: [2]
    • rice- no news from RH

Updates from OSU

  • Curator position: Interviews starting this week


Progress on transition to Github

  • Questions from CM:
  • Where to link the CO trait definitions to? - mapped to Gramene right now. Need annotations

Updates on Amigo 2.0

See link: dev.planteome.org

Possible working meeting in Montpellier July 1,2?

Next meeting date?

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