Oct 20th, 2015 Ontology Working Group Meeting: Difference between revisions

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Who: participants: AM, LC, CM, PJ, JE
=Planteome Ontology WG Zoom Meeting=
* Time: Oct 20, 2015 8:15 AM (GMT-7:00) Pacific Time (US and Canada)


Absent: MAL, DWS, EA, ...
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941


* Link to recording- Video: [[File:Ontology WG 9-29-15 video.mp4|thumbnail|Ontology WG 9-29-15_video.mp4]]
Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941
* Link to recording- Audio: [[File:Ontology WG 9-29-15 audio.m4a|thumbnail|Ontology WG 9-29-15 audio.m4a]]
 


Who: LC, AM, CM, PJ, JE, EA, MAL


Regrets:


* Link to recording- Video: [[File:10-20-15 Ontology WG Meeting-video.mp4|thumbnail|10-20-15 Ontology WG Meeting-video.mp4]]
* Link to recording- Audio: [[File:10-20-15 Ontology WG Meeting-audio.m4a|thumbnail|10-20-15_Ontology_WG_Meeting-audio.m4a ]]


==1. Training workshop in Corvallis==
==Planteome workshop Nov 9-13th, ==
* Location: Corvallis, 2nd week of Nov
* Location: Oregon State University, Corvallis, 2nd week of Nov
* notes are on the wiki- dates, accommodations
* For more details- please see the notes are on the wiki- [[Planteome_Curator_workshop_Fall_2015]]
 
 
==Plant Ontology Release #21 ==
- Many changes and updates to the PO
* Transition to GitHub complete, and working well- required many updated Xrefs and links in the various browsers, ontology files and pages.
* PO Live Browser updated for the transition to GitHub with links to the new Issue Tracker and association repository on the SVN-
*
* For more information: [http://wiki.plantontology.org/index.php/Release_21 Plant_Ontology_Release_#21]
 
* New association data developed from the [http://wiki.plantontology.org/index.php/Plant_Pheontype_Pilot_Project_2015] paper published in Feb 2015: http://www.plantmethods.com/content/11/1/10/abstract
** Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato ~ 4,193 new direct associations
 
== Discussion about Plant Trait Ontology==
See notes on: [[Sept_15th,_2015-_Ontology_Working_Group_Meeting#3._Plant_Trait_Ontology]]
 
==Update from DWS- NYBG==
 
http://www.wiley.com/WileyCDA/WileyTitle/productCd-EHEP001000.html
 
== Transition to AmiGO2- Status report ==
* Link to [http://dev.planteome.org/amigo/search/ontology Dev.Planteome site]
 
* Link to Issue Tracker on GitHub: [https://github.com/Planteome/planteome-ontology-browsers/issues]
 
* Working on getting AmiGO instances up for live site (and second dev site for Data Visualization group).  Waiting for Chris Sullivan to okay changes to server.
 
==PAG 2016: Systems Biology and Ontologies Workshop==
* Saturday Jan 9th, 8 am
* Link to PAG webpage: [https://pag.confex.com/pag/xxiv/webprogram/Session3177.html Systems Biology and Ontologies]
 
==Planteome Curator Workshop at PAG==
 
==ICBO Conference Planning==
Conference webpage: [http://icbo.cgrb.oregonstate.edu/ ICBO 2016]
 
==Next Ontology Meeting Tuesday Oct 27th==

Latest revision as of 19:03, 20 October 2015

Planteome Ontology WG Zoom Meeting

  • Time: Oct 20, 2015 8:15 AM (GMT-7:00) Pacific Time (US and Canada)

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941

Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941

Who: LC, AM, CM, PJ, JE, EA, MAL

Regrets:

Planteome workshop Nov 9-13th,


Plant Ontology Release #21

- Many changes and updates to the PO

  • Transition to GitHub complete, and working well- required many updated Xrefs and links in the various browsers, ontology files and pages.
  • PO Live Browser updated for the transition to GitHub with links to the new Issue Tracker and association repository on the SVN-
  • For more information: Plant_Ontology_Release_#21

Discussion about Plant Trait Ontology

See notes on: Sept_15th,_2015-_Ontology_Working_Group_Meeting#3._Plant_Trait_Ontology

Update from DWS- NYBG

http://www.wiley.com/WileyCDA/WileyTitle/productCd-EHEP001000.html

Transition to AmiGO2- Status report

  • Link to Issue Tracker on GitHub: [2]
  • Working on getting AmiGO instances up for live site (and second dev site for Data Visualization group). Waiting for Chris Sullivan to okay changes to server.

PAG 2016: Systems Biology and Ontologies Workshop

Planteome Curator Workshop at PAG

ICBO Conference Planning

Conference webpage: ICBO 2016

Next Ontology Meeting Tuesday Oct 27th