Revision as of 19:38, 21 January 2016

Planteome Ontology WG Zoom Meeting

Date: Thursday Jan. 21st, 2016
Time: 8:15am PST (GMT-8)
Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328

Report on PAG 2016

strong emphasis on high throughput phenotyping, machine learning is hot right now
data standardization, field scale measurements
Utilization of ontologies for data annotation
everyone wants specialized ontologies for THEIR data, not something predefined

- we need to demonstrate how ontologies are useful.

Goals of the Meeting:

Introduce the Planteome project and launch Planteome 1.0 beta
Provide an update on the progress of the collaboration with the Crop Ontology to map crop-specific trait dictionaries to the Reference Trait Ontology
Provide a summary report and overview of the Planteome Curators Workshop, held Nov 2015 in Corvallis, OR
Engage Planteome collaborators and the plant genomics community by demonstrating use cases of data annotation for rice, cassava and lentils
Seek engagement of the plant genomics community through tools and applications to integrate into your workflow

- Comments and feedback?

Issues being sorted out:

Many of our relations are not being recognized and displayed in AmiGO 2.0 (https://github.com/Planteome/planteome-ontology-browsers/issues/20)
- only showing up- is_a, part_of and occurs_in
- this is an issues for the Gene Ontology as well

Synonym scopes are not being displayed- all the broad, narrow, realted and exact synonyms are being lumped together- (https://github.com/Planteome/planteome-ontology-browsers/issues/17)

@@ Line 15: / Line 15: @@
 * Utilization of ontologies for data annotation
 * everyone wants specialized ontologies for THEIR data, not something predefined
-  - we need to demonstrate how ontologies are useful.
+- we need to demonstrate how ontologies are useful.
 =Planteome Collaborators Workshop Monday Jan 11th=