Planteome Curator workshop Fall 2015

Note: This page is under development, so check back frequently

See link to Planteome Curation Workshop Webpage

Dates: Week of Monday, Nov. 9th to Friday Nov. 13th

• People could arrive Sunday Nov 8th. See below for more info on the logistics
• Who should attend? Planteome Ontology team: developers and software team and experts from various crops
  • Barry Smith- (will attend Nov 9th-10th)
  • Dennis will attend remotely on Mon Nov 9th and Tues Nov 10th
  • Chris Mungall and Seth Carbon
  • Marie-Angelique LaPorte
  • LC, JE, AM

• Not able to attend: Elizabeth, George and John

• Will invite the CO curators who are interested, can have another session at the PAG meeting for those who cannot attend

Goals and Agenda of the meeting

1. Strategic Planning

• Goal: Form a strategic plan on how to build each ontology and how they fit together in the Planteome
• Who: Core Ontology Working Group:
  • PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC

2. GitHub, TermGenie and Protege Training

• Lead by Chris Mungall, Marie-Angelique can assist
• Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback
• Jenkins and Continuous integration

• Who: Ontology Curators
  • Planteome team: LC, AM, MAL, NYBG postdoc?, GG postdoc?, OSU undergrad students- Megan and Ethan
  • Any of the CO curators are ready to be involved in ontology development

3. Ontology Curation and Data Annotation

• Planteome Vision: Distributed ontology development and maintenance
• Wants a group of ontology developers to meet face-to-face
• Get curators together for some hands-on development and Data Annotation

• Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group?
  • legumes- soybean, Medicago (Rex Nelson), peanut, lentils (Scott Kalber)
  • tubers- cassava (Afola Agbona, IITA), potato (Reinhard Simon) and sweet potato (Vilma Huela): both from CIP
  • wheat, rice and
  • maize Mary Schaeffer

Logistics:

• Location: Oregon State University Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive
  • Hut Shuttle service from Portland Airport: http://www.hutshuttle.com/

Accommodations:

• On campus housing is available in dorm-style suites at Dixon Lodge (on-campus), is $38 per night. Private room with shared bathroom facility (separate men's and women's).
  • Link to more information about the facilities: Scholar Housing- OSU

• Link to information about hotels in Corvallis: Corvallis_Oregon-Hotels.
  • Closest hotel to campus is the Hilton Garden Inn

Other info

Dates of OSU Home Games: http://www.osubeavers.com/SportSelect.dbml?SPSID=750125&SPID=127145