Planteome Curator workshop Fall 2015
From Planteome.org
Note: This page is under development, so check back frequently
See link to Planteome Curation Workshop Webpage
Dates: Week of Monday, Nov. 9th to Friday Nov. 13th
- People could arrive Sunday Nov 8th. See below for more info on the logistics
- Who should attend? Planteome Ontology team: developers and software team and experts from various crops
- Barry Smith- (will attend Nov 9th-10th)
- Dennis will attend remotely on Mon Nov 9th and Tues Nov 10th
- Chris Mungall and Seth Carbon
- Marie-Angelique LaPorte
- LC, JE, AM
- Not able to attend: Elizabeth, George and John
- Will invite the CO curators who are interested, can have another session at the PAG meeting for those who cannot attend
Goals and Agenda of the meeting
1. Strategic Planning
- Goal: Form a strategic plan on how to build each ontology and how they fit together in the Planteome
- Who: Core Ontology Working Group:
- PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC
2. GitHub, TermGenie and Protege Training
- Lead by Chris Mungall, Marie-Angelique can assist
- Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback
- Jenkins and Continuous integration
- Who: Ontology Curators
- Planteome team: LC, AM, MAL, NYBG postdoc?, GG postdoc?, OSU undergrad students- Megan and Ethan
- Any of the CO curators are ready to be involved in ontology development
3. Ontology Curation and Data Annotation
- Planteome Vision: Distributed ontology development and maintenance
- Wants a group of ontology developers to meet face-to-face
- Get curators together for some hands-on development and Data Annotation
- Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group?
- legumes- soybean, Medicago (Rex Nelson), peanut, lentils (Scott Kalber)
- tubers- cassava (Afola Agbona, IITA), potato (Reinhard Simon) and sweet potato (Vilma Huela): both from CIP
- wheat, rice and
- maize Mary Schaeffer
Logistics:
- Location: Oregon State University Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive
- Hut Shuttle service from Portland Airport: http://www.hutshuttle.com/
Accommodations:
- On campus housing is available in dorm-style suites at Bloss Hall (on-campus)
- Private room with shared bathroom facility (separate men's and women's).
- Link to more information about the facilities: Scholar Housing- OSU
- Link to information about hotels in Corvallis: Corvallis_Oregon-Hotels.
- Closest hotel to campus is the Hilton Garden Inn
Other info
Dates of OSU Home Games: http://www.osubeavers.com/SportSelect.dbml?SPSID=750125&SPID=127145
