Planteome Ontology Development and Coordination Working Group: Difference between revisions
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'''2. Ontology development and serving to users:''' | '''2. Ontology development and serving to users:''' | ||
* With NSF's investment, they have certain requirements- need to minimize the duplication of efforts | * With NSF's investment, they have certain requirements- need to minimize the duplication of efforts | ||
* Centralized location for the ontology repositories- can be served to various portals as needed | * Centralized location for the ontology repositories- can be served to various portals as needed- such as the CO webpage the users are familiar with | ||
* Need reliable system of versioning for the ontologies | * Need reliable system of versioning for the ontologies | ||
* | * Reference ontologies need to be updated and expanded | ||
3. Annotations and linking- vision of how the data is going to be shared | '''3. Annotations and linking- vision of how the data is going to be shared''' | ||
4. Online resources web services, provide links to databases | 4. Online resources web services, provide links to databases | ||
Revision as of 19:35, 20 January 2015
Kick Off Meeting: Monday January 5th, 2015
Goal: Discuss the coordination between the NSF Planteome Project and the Crop Ontology.
Who: EA, LC and PJ
1. Progress and Updates on the Crop Ontology (http://www.cropontology.org/)
- Annotation of phenotyping data through the IBP (https://www.integratedbreeding.net)
- Ontology manager on https://www.integratedbreeding.net/
- CO traits used to populate
- Agtrials (http://www.agtrials.org/) on CIAT another source
- Involvement of ICRISAT
- Genebank accessions- done at some centers e.g. CP
- Traits may be in common, but also there is variation between crops
- CO provides community-specific vocabularies for integration of data annotations
2. Ontology development and serving to users:
- With NSF's investment, they have certain requirements- need to minimize the duplication of efforts
- Centralized location for the ontology repositories- can be served to various portals as needed- such as the CO webpage the users are familiar with
- Need reliable system of versioning for the ontologies
- Reference ontologies need to be updated and expanded
3. Annotations and linking- vision of how the data is going to be shared
4. Online resources web services, provide links to databases