Revision as of 19:30, 20 January 2015

Kick Off Meeting: Monday January 5th, 2015

Goal: Discuss the coordination between the NSF Planteome Project and the Crop Ontology. Who: EA, LC and PJ

1. Progress and Updates on the Crop Ontology (http://www.cropontology.org/)

Annotation of phenotyping data through the IBP (https://www.integratedbreeding.net)
Ontology manager on https://www.integratedbreeding.net/
CO traits used to populate
Agtrials (http://www.agtrials.org/) on CIAT another source
Involvement of ICRISAT
Genebank accessions- done at some centers e.g. CP
Traits may be in common, but also there is variation between crops
CO provides community-specific vocabularies for integration of data annotations

2. Ontology development and serving to users:

With NSF's investment, they have certain requirements- need to minimize the duplication of efforts
Centralized location for the ontology repositories- can be served to various portals as needed
Need reliable system of versioning for the ontologies
Refernce ontologies need to be updated and expanded

3. Annotations and linking- vision of how the data is going to be shared

4. Online resources web services, provide links to databases

@@ Line 13: / Line 13: @@
 * CO provides community-specific vocabularies for integration of data annotations
-. Ontology development and serving to users:
+'''2. Ontology development and serving to users:'''
 * With NSF's investment, they have certain requirements- need to minimize the duplication of efforts
 * Centralized location for the ontology repositories- can be served to various portals as needed