Planteome Ontology Development and Coordination Working Group

Kick Off Meeting: Monday January 5th, 2015

Goal: Discuss the coordination between the NSF Planteome Project and the Crop Ontology. Who: EA, LC and PJ

1. Progress and Updates on the Crop Ontology (http://www.cropontology.org/)

• Annotation of phenotyping data through the IBP (https://www.integratedbreeding.net)
• Ontology manager on https://www.integratedbreeding.net/
• CO traits used to populate
• Agtrials (http://www.agtrials.org/) on CIAT another source
• Involvement of ICRISAT
• Genebank accessions- done at some centers e.g. CP
• Traits may be in common, but also there is variation between crops
• CO provides community-specific vocabularies for integration of data annotations

2. Ontology development and serving to users:

• With NSF's investment, they have certain requirements- need to minimize the duplication of efforts
• Centralized location for the ontology repositories- can be served to various portals as needed
• Need reliable system of versioning for the ontologies
• Refernce ontologies need to be updated and expanded

3. Annotations and linking- vision of how the data is going to be shared

4. Online resources web services, provide links to databases