Thursday May 21st, 2015: Difference between revisions

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== C. Update from AISO/BisQue group- Justin Preece:==
== C. Update from AISO/BisQue group- Justin Preece:==
[http://wiki.planteome.org/index.php/Planteome_Image_Annotation_Working_Group Meetings and activities]


'''New member'''
'''New member'''
*Ryan Kitchen, CS Undergrad, Sinisa Todorovic's group
*Ryan Kitchen (CS Undergrad, Sinisa Todorovic's group)
** will be working with Xu Xu on PIA development over the summer


'''Software Specs'''
'''Software Development'''
* XX and RK are actively developing Phase I
** using a local Bisque dev engine provided by KK
* [https://docs.google.com/document/d/14i3ED8cAX6-qwdpko8eV8aQrwplLRfLHZ93dZYpjZu8/edit Specification]
* [https://docs.google.com/document/d/14i3ED8cAX6-qwdpko8eV8aQrwplLRfLHZ93dZYpjZu8/edit Specification]
* [https://docs.google.com/spreadsheets/d/12Ue35yruoazIOH6OSp_eF2R8YJtJGaqDfyIF8u3JtW4/edit#gid=0 Phase I timeline]
* [https://docs.google.com/spreadsheets/d/12Ue35yruoazIOH6OSp_eF2R8YJtJGaqDfyIF8u3JtW4/edit#gid=0 Phase I timeline]


'''Big Data + Bio-image Workshop: May 14-15, UC-Santa Barbara'''
'''Big Data + Bio-image Informatics Workshop: May 14-15, UC-Santa Barbara'''
* Attended this workshop as collaborators with the iPlant Bisque group
* JP gave an AISO software demo and talked about the Planteome project and our efforts to port AISO to iPlant Bisque
* [https://pods.iplantcollaborative.org/wiki/pages/viewpage.action?pageId=14588579 Meeting Agenda]
* [https://pods.iplantcollaborative.org/wiki/pages/viewpage.action?pageId=18186904 Report]
* [https://pods.iplantcollaborative.org/wiki/pages/viewpage.action?pageId=18186904 Report]


Revision as of 16:04, 21 May 2015

  • Who:
  • Not available:

Zoom Connection Details: Join from PC, Mac, iOS or Android: https://zoom.us/j/331293888


  • Link to recording- Video: TBA
  • Link to recording- Audio: TBA


A. General Comments and Updates:

Introductions:

Who: GG, PJ, LC, MAL, JE, JP, LC

Updates on new hires

- OSU hire- offer has been made, new person should join in late June or early July

- Aber hire- will help circulate

Plan for ontology workshop

- Involvement of Agmips, Agrovoc collaborators

Discussion about the Advisory Board

Suggestions:

  • Ruth Bastow
  • Sandy Knapp
  • From BS: Suggest: Lynn Schriml, just named President of the Standards Consortium , (but I am not pressing on her behalf).

B. Update from IT group- Data Store, AmiGO2- Justin Elser

AmiGO 2 progress

  • Working on creating an planteome importer owl file to simplify the loading of the ontologies via the golr Makefile. Working on a catalog xml file to redirect URI in the importer OWL.
  • Troubleshooting issue with loading both the environment and trait ontologies where loading both causes the EO to disappear from AmiGO.

Git migration

  • Trait ontology has been moved to git. Will move the rest after some more testing.

C. Update from AISO/BisQue group- Justin Preece:

Meetings and activities

New member

  • Ryan Kitchen (CS Undergrad, Sinisa Todorovic's group)
    • will be working with Xu Xu on PIA development over the summer

Software Development

Big Data + Bio-image Informatics Workshop: May 14-15, UC-Santa Barbara

  • Attended this workshop as collaborators with the iPlant Bisque group
  • JP gave an AISO software demo and talked about the Planteome project and our efforts to port AISO to iPlant Bisque
  • Meeting Agenda
  • Report

D. Update from Ontologies Working Group:

E. Other Comments:

Next meeting Thursday June 18th, 2015

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