Feb 18th, 2016 Ontology Working Group Meeting: Difference between revisions
Jump to navigation
Jump to search
| Line 15: | Line 15: | ||
''Currently, only the is_a, part_of and occurs_in relations are being displayed'' | ''Currently, only the is_a, part_of and occurs_in relations are being displayed'' | ||
* See Tracker: [https://github.com/Planteome/planteome-ontology-browsers/issues/20 Relations are not being recognized and displayed in AmiGO 2.0 #20] | * See Tracker: [https://github.com/Planteome/planteome-ontology-browsers/issues/20 Relations are not being recognized and displayed in AmiGO 2.0 #20] | ||
* CM: its a priority for GO as well and they are working on it, although they have been short-handed | * CM: its a priority for GO as well and they are working on it, although they have been short-handed | ||
** Could browse on OLS-beta: http://www.ebi.ac.uk/ols/beta/ontologies/to (''Note that this is only the live version to.owl- cannot view the crop specific ontologies there'') | ** Could browse on OLS-beta: http://www.ebi.ac.uk/ols/beta/ontologies/to (''Note that this is only the live version to.owl- cannot view the crop specific ontologies there'') | ||
''Can we point the OLS and others like Bioportal to 'to-basic.obo'? Looks weird with the BFO and PLANTCHEBIROLE terms.'' | |||
* The annotations should be moving correctly through the relations in the graph, even if they are not displayed | |||
** CM: This is why the relations | |||
are being filtered. | |||
* Display of CO terms with dash or colon (''did not discuss this week'') | |||
** | |||
* | |||
Eg Cassava scale terms | Eg Cassava scale terms | ||
Revision as of 22:08, 18 February 2016
Planteome Ontology WG Zoom Meeting
- Date: Thursday Feb 18th, 2016
- Time: 8:15am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/627445291
- Links to recordings:
- Attendees: AM, LC, CM, PJ, MAL, EA, GK, JE
Agenda:
Amigo 2.0 issues
- Display of relations
Currently, only the is_a, part_of and occurs_in relations are being displayed
- See Tracker: Relations are not being recognized and displayed in AmiGO 2.0 #20
- CM: its a priority for GO as well and they are working on it, although they have been short-handed
- Could browse on OLS-beta: http://www.ebi.ac.uk/ols/beta/ontologies/to (Note that this is only the live version to.owl- cannot view the crop specific ontologies there)
Can we point the OLS and others like Bioportal to 'to-basic.obo'? Looks weird with the BFO and PLANTCHEBIROLE terms.
- The annotations should be moving correctly through the relations in the graph, even if they are not displayed
- CM: This is why the relations
are being filtered.
- Display of CO terms with dash or colon (did not discuss this week)
Eg Cassava scale terms
- Status of the Biocuration presentation and possible ICBO paper: Comparison of ontology mapping techniques to map traits (MAL)
- bottleneck: needs of a collaborative revision of the design patterns
- Revisons to the equivalence axioms
- occurs_in, Inheres_in
- how to describe "number_of"
- agreement on a timeline
- Display of the Crop Ontologies in amiGO2
- crop specific names
- Visit to IRRI: 7-11 March: TD revision and data annotation
- Status of second year funding??