Planteome Curator workshop Fall 2015: Difference between revisions
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* Will invite the CO curators who are interested, can have another session at the PAG meeting for those who cannot attend | * Will invite the CO curators who are interested, can have another session at the PAG meeting for those who cannot attend | ||
= Goals and Agenda of the meeting= | == Goals and Agenda of the meeting== | ||
== 1. Strategic Planning == | === 1. Strategic Planning === | ||
* Goal: Form a strategic plan on '''how to build each ontology''' and '''how they fit together in the Planteome''' | * Goal: Form a strategic plan on '''how to build each ontology''' and '''how they fit together in the Planteome''' | ||
* Who: Core Ontology Working Group: | * Who: Core Ontology Working Group: | ||
** PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC | ** PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC | ||
==2. GitHub, TermGenie and Protege Training== | ===2. GitHub, TermGenie and Protege Training=== | ||
* Lead by Chris Mungall, Marie-Angelique can assist | * Lead by Chris Mungall, Marie-Angelique can assist | ||
* Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback | * Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback | ||
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** Any of the CO curators are ready to be involved in ontology development | ** Any of the CO curators are ready to be involved in ontology development | ||
==3. Ontology Curation and Data Annotation== | ===3. Ontology Curation and Data Annotation=== | ||
* '''Planteome Vision: Distributed ontology development and maintenance''' | * '''Planteome Vision: Distributed ontology development and maintenance''' | ||
* Wants a group of ontology developers to meet face-to-face | * Wants a group of ontology developers to meet face-to-face | ||
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** wheat, rice and maize? | ** wheat, rice and maize? | ||
==Logistics:== | ===Logistics:=== | ||
* Planned to be in Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive | * Planned to be in Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive | ||
** Hut Shuttle service from Portland Airport: http://www.hutshuttle.com/ | ** Hut Shuttle service from Portland Airport: http://www.hutshuttle.com/ | ||
Revision as of 23:11, 5 October 2015
Note: This page is under development, so check back frequently
Dates: Week of Monday, Nov. 9th to Friday Nov. 13th
- People could arrive Sunday Nov 8th. See below for more info on the logistics
- Who should attend? Planteome Ontology team: developers and software team and experts from various crops
- Barry Smith- (will attend Nov 10th-11th???)
- Dennis will attend remotely on Mon Nov 9th and Tues Nov 10th
- Chris Mungall and Seth Carbon
- Marie-Angelique LaPorte
- LC, JE, AM
- Not able to attend: Elizabeth, George and John
- Will invite the CO curators who are interested, can have another session at the PAG meeting for those who cannot attend
Goals and Agenda of the meeting
1. Strategic Planning
- Goal: Form a strategic plan on how to build each ontology and how they fit together in the Planteome
- Who: Core Ontology Working Group:
- PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC
2. GitHub, TermGenie and Protege Training
- Lead by Chris Mungall, Marie-Angelique can assist
- Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback
- Jenkins and Continuous integration
- Who: Ontology Curators
- Planteome team: LC, AM, MAL, NYBG postdoc?, GG postdoc?, OSU undergrad students- Megan and Ethan
- Any of the CO curators are ready to be involved in ontology development
3. Ontology Curation and Data Annotation
- Planteome Vision: Distributed ontology development and maintenance
- Wants a group of ontology developers to meet face-to-face
- Get curators together for some hands-on development and Data Annotation
- Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group?
- legumes- soybean, Medicago (Rex Nelson), peanut, lentils (Scott Kalber)
- tubers- cassava (Afola Agbona, IITA), potato (Reinhard Simon) and sweet potato (Vilma Huela): both from CIP
- wheat, rice and maize?
Logistics:
- Planned to be in Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive
- Hut Shuttle service from Portland Airport: http://www.hutshuttle.com/
- Accommodations:
- On campus housing may be available in dorm-style suites Scholar Housing- OSU
- Link to information about hotels in Corvallis: Corvallis_Oregon-Hotels.
- Closest hotel to campus is the Hilton Garden Inn
Dates of OSU Home Games: http://www.osubeavers.com/SportSelect.dbml?SPSID=750125&SPID=127145