Planteome Curator workshop Fall 2015: Difference between revisions

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** legumes- soybean, Medicago, peanut, lentils (?)
** legumes- soybean, Medicago, peanut, lentils (?)
*** Rex Nelson, "peanut guy"
*** Rex Nelson, "peanut guy"
** tubers- cassava (Afola Agbona, IITA), potato and sweet potato (Vilma Huela, Reinhard Simon from CIP)
** tubers- cassava (Afola Agbona, [http://www.iita.org/ IITA]), potato and sweet potato (Vilma Huela, Reinhard Simon from CIP)
** rice
** rice
** maize- curators from CIMMYT- Rosemary?
** maize- curators from CIMMYT- Rosemary?

Revision as of 20:25, 22 September 2015

Discussions from 9-15-15 Ontology WG meeting:

Goals of the meeting

  • Who should attend: Planteome Ontology team: developers and software team and experts from various crops

1. Strategic Planning

  • Goal: Form a strategic plan on how to build each ontology and how they fit together in the Planteome
  • Who: Core Ontology Working Group:
    • PJ, LC, AM, JE, DWS, CM, BS, EA, MAL, GG, SC

2. GitHub, TermGenie and Protege Training

  • Lead by Chris Mungall, Marie-Angelique can assist
  • Goal: Train curators in using the GitHub Repositories and Protege software for ontology curation - collect their feedback
  • Who: Ontology Curators
    • Planteome team: LC, AM, MAL, NYBG postdoc?, GG postdoc?, OSU undergrad students- Megan and Ethan
    • Which of the CO curators are ready to be involved in ontology development??

3. Ontology Curation and Data Annotation

  • Planteome Vision: Distributed ontology development and maintenance
  • Wants a group of ontology developers to meet face-to-face
  • Get curators together for some hands-on development and Data Annotation
  • Possible Ontology Developers- collaborators to be included based on areas of focus- maybe a dedicated group for each crop group?
    • legumes- soybean, Medicago, peanut, lentils (?)
      • Rex Nelson, "peanut guy"
    • tubers- cassava (Afola Agbona, IITA), potato and sweet potato (Vilma Huela, Reinhard Simon from CIP)
    • rice
    • maize- curators from CIMMYT- Rosemary?
    • wheat- curators from CIMMYT- ??

Logistics:

  • Planned to be in Corvallis- plan to fly into Portland (PDX) ~1.5hrs drive, or Eugene (EUG) ~ 50 mins drive
  • Dates: October-November- "2-3 days(core), with a few days more for outside ontologists"
  • Doodle poll will be circulated (LC)
    • Barry: "Any 3 days in Nov 3-16 would work (this includes 2 half days for travel), preferred in Nov 4-15"

Dates of OSU Home Games: http://www.osubeavers.com/SportSelect.dbml?SPSID=750125&SPID=127145

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