Wednesday June 24th, 2015

Agenda

Planteome Project is inviting you to a scheduled Zoom meeting. Join from PC, Mac, iOS or Android: https://zoom.us/j/667957473

• Who: LC, MAL, PJ, JP,
• Not available:

(Others: GG, JE, DWS, EZ, ST? )

A. General Comments and Updates:

Introductions:

• Any new faces?

Updates on new hires

• New postdoc at OSU: details TBA

Workshop and travels: Elizabeth's questions

a. What will be the objective of the workshop?

b. Who will be the attendees ? data manager, ontology curators, researchers?

I propose to consider: Use of Protégé; Discussion on Traits/trait mapping; Discussion on possible annotation pipelines and test on data sets

c. Travel budget: shall we keep our travel budget for this workshop or can we use it entirely for visit to CGIAR centers on our side

B. Update from IT group- Data Store, AmiGO2- Justin Elser

• AmiGO 2 progress
  • Fixed issue with loading both EO and TO together. Issue was that they were both trying to use the "TEMP" namespace after the conversion to OWL. Wrote a little script to fix it.
  • Wrote an importer owl file (planteome.owl) that is used when loading. We can add new ontologies simply by adding a line to the import list.

• Git migration
  • Working on using Chris Mungall's script to migrate TO term requests from sourceforge to github.