Oct 20th, 2015 Ontology Working Group Meeting: Difference between revisions
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=Planteome Ontology WG Zoom Meeting= | |||
* Time: Oct 20, 2015 8:15 AM (GMT-7:00) Pacific Time (US and Canada) | |||
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941 | |||
Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941 | |||
== | Who: LC, AM, CM, PJ, JE, EA, MAL | ||
* Location: Corvallis, 2nd week of Nov | |||
* notes are on the wiki- | Regrets: | ||
* Link to recording- Video: [[File:10-20-15 Ontology WG Meeting-video.mp4|thumbnail|10-20-15 Ontology WG Meeting-video.mp4]] | |||
* Link to recording- Audio: [[File:10-20-15 Ontology WG Meeting-audio.m4a|thumbnail|10-20-15_Ontology_WG_Meeting-audio.m4a ]] | |||
==Planteome workshop Nov 9-13th, == | |||
* Location: Oregon State University, Corvallis, 2nd week of Nov | |||
* For more details- please see the notes are on the wiki- [[Planteome_Curator_workshop_Fall_2015]] | |||
==Plant Ontology Release #21 == | |||
- Many changes and updates to the PO | |||
* Transition to GitHub complete, and working well- required many updated Xrefs and links in the various browsers, ontology files and pages. | |||
* PO Live Browser updated for the transition to GitHub with links to the new Issue Tracker and association repository on the SVN- | |||
* | |||
* For more information: [http://wiki.plantontology.org/index.php/Release_21 Plant_Ontology_Release_#21] | |||
* New association data developed from the [http://wiki.plantontology.org/index.php/Plant_Pheontype_Pilot_Project_2015] paper published in Feb 2015: http://www.plantmethods.com/content/11/1/10/abstract | |||
** Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato ~ 4,193 new direct associations | |||
== Discussion about Plant Trait Ontology== | |||
See notes on: [[Sept_15th,_2015-_Ontology_Working_Group_Meeting#3._Plant_Trait_Ontology]] | |||
==Update from DWS- NYBG== | |||
http://www.wiley.com/WileyCDA/WileyTitle/productCd-EHEP001000.html | |||
== Transition to AmiGO2- Status report == | |||
* Link to [http://dev.planteome.org/amigo/search/ontology Dev.Planteome site] | |||
* Link to Issue Tracker on GitHub: [https://github.com/Planteome/planteome-ontology-browsers/issues] | |||
* Working on getting AmiGO instances up for live site (and second dev site for Data Visualization group). Waiting for Chris Sullivan to okay changes to server. | |||
==PAG 2016: Systems Biology and Ontologies Workshop== | |||
* Saturday Jan 9th, 8 am | |||
* Link to PAG webpage: [https://pag.confex.com/pag/xxiv/webprogram/Session3177.html Systems Biology and Ontologies] | |||
==Planteome Curator Workshop at PAG== | |||
==ICBO Conference Planning== | |||
Conference webpage: [http://icbo.cgrb.oregonstate.edu/ ICBO 2016] | |||
==Next Ontology Meeting Tuesday Oct 27th== | |||
Latest revision as of 19:03, 20 October 2015
Planteome Ontology WG Zoom Meeting
- Time: Oct 20, 2015 8:15 AM (GMT-7:00) Pacific Time (US and Canada)
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941
Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/592326941
Who: LC, AM, CM, PJ, JE, EA, MAL
Regrets:
- Link to recording- Video: File:10-20-15 Ontology WG Meeting-video.mp4
- Link to recording- Audio: File:10-20-15 Ontology WG Meeting-audio.m4a
Planteome workshop Nov 9-13th,
- Location: Oregon State University, Corvallis, 2nd week of Nov
- For more details- please see the notes are on the wiki- Planteome_Curator_workshop_Fall_2015
Plant Ontology Release #21
- Many changes and updates to the PO
- Transition to GitHub complete, and working well- required many updated Xrefs and links in the various browsers, ontology files and pages.
- PO Live Browser updated for the transition to GitHub with links to the new Issue Tracker and association repository on the SVN-
- For more information: Plant_Ontology_Release_#21
- New association data developed from the [1] paper published in Feb 2015: http://www.plantmethods.com/content/11/1/10/abstract
- Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato ~ 4,193 new direct associations
Discussion about Plant Trait Ontology
See notes on: Sept_15th,_2015-_Ontology_Working_Group_Meeting#3._Plant_Trait_Ontology
Update from DWS- NYBG
http://www.wiley.com/WileyCDA/WileyTitle/productCd-EHEP001000.html
Transition to AmiGO2- Status report
- Link to Dev.Planteome site
- Link to Issue Tracker on GitHub: [2]
- Working on getting AmiGO instances up for live site (and second dev site for Data Visualization group). Waiting for Chris Sullivan to okay changes to server.
PAG 2016: Systems Biology and Ontologies Workshop
- Saturday Jan 9th, 8 am
- Link to PAG webpage: Systems Biology and Ontologies
Planteome Curator Workshop at PAG
ICBO Conference Planning
Conference webpage: ICBO 2016