Wednesday June 24th, 2015

Agenda

Planteome Project is inviting you to a scheduled Zoom meeting. Join from PC, Mac, iOS or Android: https://zoom.us/j/667957473

• Who: LC, MAL, PJ, JP,
• Not available: EA (COPO workshop)

(Others: GG, JE, DWS, EZ, ST? )

• Link to recording- Video: File: File:All Hands Meeting 6-24-15 video.mp4
• Link to recording- Audio: File: File:All Hands Meeting 6-24-15 audio.m4a

A. General Comments and Updates:

Introductions:

• Any new faces?

Updates on new hires

• New postdoc at OSU: details TBA

Workshop and travels: Elizabeth's questions

a. What will be the objective of the workshop?

b. Who will be the attendees ? data manager, ontology curators, researchers?

I propose to consider: Use of Protégé; Discussion on Traits/trait mapping; Discussion on possible annotation pipelines and test on data sets

c. Travel budget: shall we keep our travel budget for this workshop or can we use it entirely for visit to CGIAR centers on our side

B. Update from IT group- Data Store, AmiGO2- Justin Elser

• AmiGO 2 progress
  • Fixed issue with loading both EO and TO together. Issue was that they were both trying to use the "TEMP" namespace after the conversion to OWL. Wrote a little script to fix it.
  • Wrote an importer owl file (planteome.owl) that is used when loading. We can add new ontologies simply by adding a line to the import list.

• Git migration
  • Working on using Chris Mungall's script to migrate TO term requests from sourceforge to github.

C. Update from AISO/BisQue group- Justin Preece

• Held two developer meetings: May 28, June 11
• BisQue Module user interface work has begun: can load an image and mark it with polylines
• Added a code repository for this module to Planteome Github
• Currently working on adding more base UI functionality (background markup), the skeleton server-side graph cuts software, and demonstrating a successful round-trip processing test from Bisque client to Bisque server

D. Update from Ontologies Working Group:

Needs to be filled in...