Aug 23rd, 2016 Ontology Working Group Meeting
Planteome Ontology WG Zoom Meeting
- Date: Tuesday Aug 23rd, 2016
- Time: 8:15am PDT (GMT-7)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/217118644
- Attendees: LC, AM, JE, CM, MAL, BS, DWS, BtSinn, Dario, GG
- Regrets: EA, PJ
Recordings:
Follow up from ICBO conference
- DWS
- Working on the monocot matrix with Chelsea Specht- she sent it out to CM, DWS etc?
- Matrix files can be translated to Nexus files
- Character states and names of terminals start at '0'
- Banana terms need work
- Preparing images labeled with PO terms
- In situs for gene expression can be associated to GO temrs
- Line art good for recognition
- Brandon and Dario working on the images
- Meeting with JP et al again soon
- George:
- Continuing to develop PlantPhenomeNet
- High throughput phenotyping- with John Doonan at Aber.- proposal to standardize the terminology
- Possible joint call from EuroCap
- Luke continuing to work on AberOwl- special version for plants
- GG will follow up with PJ about paperwork
- CM:
- Need YAML template for TO..????
- TermGenie should be working, it was down on Monday etc
- New design patterns for TO could be incorporated??
- From Mal: On OBOFoundry, NCBI taxonomy ontology lacks any authorities, open tracker for
- CM: what is plan for EO? Lets change the abbreviation
- Would like to see the CO ids registered
- AM:
- Progress on the OOPS soon
- Using simple patterns to create the terms
Updates from Planteome members
MAL: newest trait dictionaries being completed:
- wheat - in progress; MAL is doing the mapping
- Rosemary validated the mappings during the Montpellier workshop - MAL will create the OBO file after it is checked over, will add common name in the trait names
Upcoming Release
PJ attending NSF meeting Sept 7-8th
Plant and Cell Physiology Database manuscript
Fall workshop planning
Other items?
Upcoming Meetings and Workshops
GODAN Summit, New York City, Sept 15-16th, 2016
- Who is involved- will present an exhibit booth together:
- Planteome- PJ will attend, also possibly LC?
- Crop Ontology- Bioversity- EA will attend
- Gramene
- Agronomy Ontology- Medha
- IC3-FOODS at UC Davis for Food Ontology
- Agricultural Nutrition and Technology ontology (ANT)
- Materials for booth are being collected in DropBox folder:
- Project logo in high resolution
- Short slide show (~ 5 slides) to show your project's impact and applications
- Any handouts like brochures
- Also can bring swag gifts such as tote bags, coffee mugs,pens,jump drives with your project materials on it, etc
4th International Plant Phenotyping Symposium, CIMMYT, December 13 – 15, 2016
- International Maize and Wheat Improvement Center (CIMMYT)
- El Batan, Texcoco, México (Near Mexico City)
- Early bird registration deadline: October 16, 2016
Plant and Animal Genome 2017, Jan 14-18, 2017, San Diego, CA, USA
XIX International Botanical Congress, July 23-29, 2017, Shenzhen, China
Workshop proposal accepted