Nov 24th, 2015 Ontology Working Group Meeting

Planteome Ontology WG Zoom Meeting:

Date: Tuesday Nov. 24th, 2015 Time: 9am PST (GMT-8)

• ^{Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/551476918}

Attendees: - AM, MAL, Lol, PJ, JE .....

Regrets:

Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR

• Link to workshop page: http://planteome.org/curation_workshop_2015
• Link to Agenda page: [1]

Attendees:

• Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU
• Barry Smith
• Chris Mungall, Seth Carbon
• Marie-Angélique Laporte, Leo Valette, Elizabeth Arnaud (remotely)
• Vilma Hualla, Omar Benites CIP- Sweet Potato
• Agbona Afolabi- Cassava IITA
• Karthika Rajendra- Lentil ICARDA
• Rex Nelson- SoyBase
• Also Sinisa, Eugene, Botong

Workflow Details

• For test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)
• Work coordinated through GitHub site
• Readme file on each GitHub repo should be filled in with this information

• TD xls file - stay intact as a reference

• Create a mapping spreadsheet- similar to “lentil-mapping-TO-CO_339.xls”- leaving the method and scale in and move to a tab in the google spreadsheet

• Owl file with proposed mappings- MAL will extract mapping from owl files- add to mapping spreadsheet on gsheet. These are the ones the curators selected

• MAL should put the computationally-derived mappings on the gsheet as well. That way we could review them

• Curators should Open TO tracker Issues for terms they need added to TO:
  • Template for missing terms or ones that need revision:
  • Ref to CO term name and ID
  • entity and attribute
  • proposed TO term name
  • Proposed parent in TO
  • proposed TO definition

• Optional information:
  • link to CO term on CO website
  • method and scale (is also on the gsheet)
  • literature citation

TermGenie

• TermGenie Instance for TO- Questions and Issues:

• Link to TG instance for TO: http://to.termgenie.org/

• Comments have been moved to new Issue: [2]

• Proposed workflow for new requesters (from CM):

Sign up for a persona account (use the link above) Add a ticket to the TO tracker, include persona username, requesting TG permission. I will take care of these.