Sept 15th, 2015- Ontology Working Group Meeting
Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada)
Connection details: Join from PC, Mac, iOS or Android: https://zoom.us/j/655429261
- In attendance: LC, MAL, AM, + ??????
Agenda
1. Upcoming Plant Ontology release #21
- New association data developed from the Plant Phenotype Pilot Project paper published in Feb 2015: http://www.plantmethods.com/content/11/1/10/abstract
- Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato
- New association data developed from MaizeGDB (Mary Schaeffer) based on data set from Scott Stelpfulg et al (Kaeppler group) update of the Nimblegen Microarray data - more tissues, not so much background noise;
- The Plant Genome: "An expanded maize gene expression atlas based on RNA-sequencing and its use to
explore root development"
- https://dl.sciencesocieties.org/publications/tpg/first-look doi:10.3835/plantgenome2015.04.0025; Accepted paper, posted 08/07/2015.
Scott Stelpfulg et al (Kaeppler group) update of the Nimblegen Microarray data - more tissues, not so much background noise; http://betabrowse.maizegdb.org/obo-envo@lists.sourceforge.netetc/images/GeneAtlas/15773.png
The Plant Genome doi:10.3835/plantgenome2015.04.0025
Accepted paper, posted 08/07/2015.
- Browser updated for the transition to GitHub