Ontology Working Group Meeting, Tuesday June 9th, 2015

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Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada) Connection details: Join from PC, Mac, iOS or Android: https://zoom.us/j/834566681

  • Who will attend: LC, MAL, DWS, PJ, BS
  • Others?: , CM, GG
  • Regrets: JE, EA

Agenda

Summary from last meeting May 26th:

  • Report form UN meeting- BS- need links to publication
  • Updates underway to the Trait Template (Leo)
  • Discussion of the id space for Crop Ontologies
  • Discussion of the hierarchy of the CO Vocabs- not a problem if the terms have logical def'ns, just import as flat file.
  • Mapping to TO with Agreement Maker Light - see below
  • Progress on AmiGO2 browser development: http://dev.planteome.org/amigo
  • Updates on the transition to Github: https://github.com/Planteome

Other Updates, etc

  • OSU: Offer has been made to postdoc, waiting for confirmation, hopefully will start around the end of June, undergraduate student hired for summer, another one joining in August
  • NYBG: - Offer to postdoc candidate has been made, waiting for confirmation, graduate student will be joining to help with the imaging work
    • Also working with the AISO-Bisque team to generate images. Idea to do a use case study involving in situ analysis- leaf development or procambium development

Report from Bioversity team

Introduce new Crop_Ontology_Pages on the wiki (MAL)

  • Marie-Angelique has created an informative page on the wiki with information about the structure and format of the CO vocabularies.
  • Current structure of the Trait template (v.4)
  • Future structure of the Trait Template (v.5)

Updates on work on Plant Disease Ontology and future plans for Plant Stress Ontology (Laurel)







Mappings from CO to TO: MAL

Tabled for next meeting....

Next Meeting Tuesday June 23rd

Back to the Planteome_Ontology_Development_and_Coordination_Working_Group page