Ontology Working Group Meeting, Tuesday June 9th, 2015
Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada) Connection details: Join from PC, Mac, iOS or Android: https://zoom.us/j/834566681
- Who will attend: LC, MAL, DWS, PJ, BS
- Others?: , CM, GG
- Regrets: JE, EA
- Link to recording- Video: File: File:Ontology WG 6-9-15 audio only.m4a
- Link to recording- Audio: File: File:Ontology WG 6-9-15 video.mp4
Agenda
Summary from last meeting May 26th:
- Report form UN meeting- BS- need links to publication
- Updates underway to the Trait Template (Leo)
- Discussion of the id space for Crop Ontologies
- Discussion of the hierarchy of the CO Vocabs- not a problem if the terms have logical def'ns, just import as flat file.
- Mapping to TO with Agreement Maker Light - see below
- Progress on AmiGO2 browser development: http://dev.planteome.org/amigo
- Updates on the transition to Github: https://github.com/Planteome
Other Updates, etc
- OSU: Offer has been made to postdoc, waiting for confirmation, hopefully will start around the end of June, undergraduate student hired for summer, another one joining in August
- NYBG: - Offer to postdoc candidate has been made, waiting for confirmation, graduate student will be joining to help with the imaging work
- Also working with the AISO-Bisque team to generate images. Idea to do a use case study involving in situ analysis- leaf development or procambium development
Report from Bioversity team
Introduce new Crop_Ontology_Pages on the wiki (MAL)
- Marie-Angelique has created an informative page on the wiki with information about the structure and format of the CO vocabularies.
- Current structure of the Trait template (v.4)
- Future structure of the Trait Template (v.5)
Mappings from CO to TO: MAL
Tabled for next meeting....
Updates on work on Plant Disease Ontology and future plans for Plant Stress Ontology (Laurel)
- Discussion of overall structure and goals: Trait + Stress Dev Ontology
Discussion of Timeline and Plan
Next Meeting Tuesday June 23rd
Back to the Planteome_Ontology_Development_and_Coordination_Working_Group page