Ontology Working Group Meeting, Tuesday June 23rd, 2015

Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada)

Connection details: TBA

• Who will attend: LC, MAL, DWS, PJ, BS
• Others: CM, GG, JE, EA ?
• Regrets:

Mappings from CO to TO: MAL

From last meeting ( :

• Marie-Angelique is testing Mapping to TO using the program Agreement Maker Light (AML) (http://agreementmaker.org/) tool
• Import as OWL or OBO, * Needs to make the product using owl files??
• Add mapping to terms, structure or words

Results of mapping to Wheat Ontology CO:321

• The Wheat Ontology CO:321 has 240 trait terms, with 46 xrefs to the TO (done by Rosemary Shrestha)
• The manually created Xrefs to TO can be used to double check the AML mappings (a caution as they were created some time ago- may be out of date)
• The AML tool found about 73 mapping, case independent

• Results: color coding:
  • Green- Xref and AML in agreement
  • Orange- Xref and AML NOT in agreement
  • No color- new mapping that the AML tool found- about 30 new ones identified, need to be verified.

• Mapping to PO was complicated by the presence of the synonyms, and issue of AML did not want to use the PO terms more than once.

• Examples of lack of agreement:

CO term: CO:321:0000040 grain size Xref: to seed size TO:0000391- AML maps it to: TO:0000397 grain size

Note: Xref Links CO trait definitions which are mapped to Gramene right have been changed to the Planteome page- mainly in the wheat file