Ontology Working Group Meeting, Tuesday June 9th, 2015
Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada) Connection details: Join from PC, Mac, iOS or Android: https://zoom.us/j/834566681
- Who will attend: LC, MAL, DWS, PJ
- Others?: BS, CM, GG
- Regrets: JE, EA
Agenda
Summary from last meeting:
- Report form UN meeting- BS- need links to publication
- Updates underway to the Trait Template (Leo)
- Discussion of the id space for Crop Ontologies
- Discussion of the hierarchy of the CO Vocabs- not a problem if the terms have logical def'ns, just import as flat file.
- Mapping to TO with Agreement Maker Light - see below
- Progress on AmiGO2 browser development: http://dev.planteome.org/amigo
- Updates on the transition to Github: https://github.com/Planteome
Other Updates, etc
- Hiring:
- OSU: Offer has been made, waiting for confirmation, undergraduate student hired for summer, another one joining in August
- Aberystwyth, UK- Position posted, any update?
- NYBG- Any news?
Report from Bioversity team
Introduce new Crop_Ontology_Pages on the wiki (MAL)
- Marie-Angelique has created an informative page on the wiki with information about the structure and format of the CO vocabularies.
- Current structure of the Trait template (v.4)
- Future structure of the Trait Template (v.5)
Mappings from CO to TO: MAL
From last meeting:
- Marie-Angelique is testing Mapping to TO using the program Agreement Maker Light (AML) (http://agreementmaker.org/) tool
- Import as OWL or OBO, * Needs to make the product using owl files??
- Add mapping to terms, structure or words
- Starting with the wheat ontology file as it has manually created Xrefs to TO which can be used to double check the AML mappings
Note: Xref Links CO trait definitions which are mapped to Gramene right have been changed to the Planteome page- mainly in the wheat file?
Updates on work on Plant Disease Ontology and future plans for Plant Stress Ontology (Laurel)
- Discussion of overall structure and goals: Trait + Stress Dev Ontology
Discussion of Timeline and Plan
Next Meeting Tuesday June 23rd
Back to the Planteome_Ontology_Development_and_Coordination_Working_Group page