Ontology Working Group Meeting, Tuesday June 9th, 2015

Time: 8:15am PDT (GMT-7:00) Pacific Time (US and Canada) Connection details: Join from PC, Mac, iOS or Android: https://zoom.us/j/834566681

• Who will attend: LC, MAL, DWS, PJ
• Others?: BS, CM, GG
• Regrets: JE, EA

Agenda

Summary from last meeting:

• Report form UN meeting- BS- need links to publication
• Updates underway to the Trait Template (Leo)
• Discussion of the id space for Crop Ontologies
• Discussion of the hierarchy of the CO Vocabs- not a problem if the terms have logical def'ns, just import as flat file.
• Mapping to TO with Agreement Maker Light - see below
• Progress on AmiGO2 browser development: http://dev.planteome.org/amigo
• Updates on the transition to Github: https://github.com/Planteome

Report from Bioversity team

Introduce new Crop_Ontology_Pages on the wiki (MAL)

• Marie-Angelique has created an informative page on the wiki with information about the structure and format of the CO vocabularies.
• Current structure of the Trait template (v.4)
• Future structure of the Trait Template (v.5)

Mappings from CO to TO: MAL

From last meeting:

• Marie-Angelique is testing Mapping to TO using the program Agreement Maker Light (AML) (http://agreementmaker.org/) tool
• Import as OWL or OBO, * Needs to make the product using owl files??
• Add mapping to terms, structure or words
• Starting with the wheat ontology file as it has manually created Xrefs to TO which can be used to double check the AML mappings

Note: Xref Links CO trait definitions which are mapped to Gramene right have been changed to the Planteome page- mainly in the wheat file?

Updates on work on Plant Disease Ontology and future plans for Plant Stress Ontology (Laurel)

• Discussion of overall structure and goals: Trait + Stress Dev Ontology

Next Meeting Tuesday June 23rd

Back to the Planteome_Ontology_Development_and_Coordination_Working_Group page