Ontology Working Group Meeting, Tuesday April 28th, 2015
Planteome Ontology Working Group Meeting
- Time: Apr 28, 2015 8:30 AM (GMT-7:00) Pacific Time (US and Canada)
- Connection: Join from PC, Mac, iOS or Android: https://zoom.us/j/666739728
Agenda:
Who: LC, PJ, EA, LV, CM, DWS
Updates from CO team
- LV has been progressing on several crop trait dictionaries, working with the plant breeders:
- cowpea TD - discussing with the users, waiting for feedback
- pigeon pea TD- Training was done with the breeders at the BMS, requested more traits, added 12 new, submitted revisions to Preasad, then it will be uploaded. Done offline, via email and dropbox.
Note: Discussion of the workflow: Working with Julian Pietragalla, Technical Support Officer of the BMS ([1]). Julian is at CIMMYT, deals with the data standards for the BMS.
- EA and LV are going to CIMMYT for all next week (May 3-8th?) to meet with the BMS folks and make revisions to the Trait Dictionaries. All the crops are on the list, wheat, maize, the legumes, etc
- Also will be working on better guidelines to fill in the TDs
- PJ Question: Are there already vocabularies in place to annotate the germplasm/ GWAS datasets, etc. Is there a list of traits?. CIMMYT researchers are part of [ TCAP project.
- rice- no news from RH
Updates from OSU
- Curator position: Interviews starting this week
Progress on transition to Github
- See: https://github.com/Planteome
- created repos for CGIAR rice, maize, wheat and cassava
- Will remove from SVN
- Questions from CM:
- Where to link the CO trait definitions to? - mapped to Gramene right now. Need annotations
Updates on Amigo 2.0
See link: dev.planteome.org