Jan 21st, 2016 Ontology Working Group Meeting

Planteome Ontology WG Zoom Meeting

• Date: Thursday Jan. 21st, 2016
• Time: 8:15am PST (GMT-8)
• Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328

• Attendees: TBA

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Report on the PAG Workshop with CG Collaborators Monday Jan 11th

- http://planteome.org/outreach/workshops/PAG_2016

- 29 attendees ( link to spreadsheet: https://docs.google.com/spreadsheets/d/12Wl98Hy8LeQRZoDME2hDkqNgKqCjG89ymndJN84hP3I/edit?usp=docslist_api)

- Comments and feedback?

Update on browsers

• Main Planteome website: http://planteome.org/

• Development site: http://dev.planteome.org/amigo

Issues being sorted out:

• Many of our relations are not being recognized and displayed in AmiGO 2.0 (https://github.com/Planteome/planteome-ontology-browsers/issues/20)
  • only showing up- is_a, part_of and occurs_in
  • this is an issues for the Gene Ontology as well

• Synonym scopes are not being displayed- all the broad, narrow, realted and exact synonyms are being lumped together- (https://github.com/Planteome/planteome-ontology-browsers/issues/17)