Nov 24th, 2015 Ontology Working Group Meeting
Planteome Ontology WG Zoom Meeting:
Date: Tuesday Nov. 24th, 2015 Time: 9am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/551476918
Attendees: - AM, MAL, Lol, PJ, JE ..... Regrets:
Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR
- Link to workshop page: http://planteome.org/curation_workshop_2015
- Link to Agenda page: [1]
Attendees:
- Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU
- Barry Smith
- Chris Mungall, Seth Carbon
- Marie-Angélique Laporte, Leo Valette, Elizabeth Arnaud (remotely)
- Vilma Hualla, Omar Benites CIP- Sweet Potato
- Agbona Afolabi- Cassava IITA
- Karthika Rajendra- Lentil ICARDA
- Rex Nelson- SoyBase
The overall goal is to enrich the Trait Ontology with terms that can be mapped to their equivalents in the various crop specific trait dictionaries.
Workflow for test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)
- TD xls file - stay intact as a reference
- Create a mapping spreadsheet- similar to “lentil-mapping-TO-CO_339.xls”- leaving the method and scale in and move to a tab in the google spreadsheet
- Owl file with proposed mappings- MAL will extract mapping from owl files- add to mapping spreadsheet on gsheet. These are the ones the curators selected
- MAL should put the computationally-derived mappings on the gsheet as well. That way we could review them
Curators should Open TO tracker Issues for terms they need added to TO: Template for missing terms or ones that need revision: Ref to CO term name and ID entity and attribute proposed TO term name Proposed parent in TO proposed TO definition
Optional information: link to CO term on CO website method and scale (is also on the gsheet) literature citation
Readme file on GitHub repo should be filled in with this information