Jan 21st, 2016 Ontology Working Group Meeting
Planteome Ontology WG Zoom Meeting
- Date: Thursday Jan. 21st, 2016
- Time: 8:15am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328
- Attendees: TBA
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Report on the PAG Workshop with CG Collaborators Monday Jan 11th
- 29 attendees
Revisions to the biochemical trait TO:0000277 branch of the TO:
Revisions to the upper-level categories
Previously mentioned December 8th meeting
current upper level terms:
- TO:0000283 biological process related trait
- TO:0000282 enzymatic activity and protein content related trait
- TO:0000281 metabolite content related trait
- TO:0000465 mineral and ion content related trait
- TO:0020080 stover organic matter digestability
Suggest reducing to:
- mineral and ion content trait
- metabolite content trait
- biological process trait
content/concentration/amount
Biochemists definitions:
- concentration = amount/ VOLUME
- content = amount/MASS
PATO defs:
- ‘concentration of’ -A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
- 'amount' -The number of entities of this type that are part of the whole organism.
-Requested a revision of the 'amount' definition
- The number of entities of this type that are part of another entity.
Options:
- Merge content and concentration terms
- Add new parent term 'amount'. Make content and concentration terms children of this parent (see image)