Ontology Working Group Meetings- Feb 2015: Difference between revisions
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* Visualized by the tool | * Visualized by the tool | ||
Common Trait Classes: | Common Trait Classes (e.g.) : Maize Ontology (http://www.cropontology.org/ontology/CO_322/Maize) | ||
* "Agronomic/Agronomical" | * "Agronomic/Agronomical" | ||
* Morphological | * Morphological | ||
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* Quality | * Quality | ||
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* method_of | |||
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Revision as of 00:30, 12 February 2015
Tuesday, Feb 10th, 2015
Who: PJ, EA, LC, JE, CM, BS
1. Coordination between the species-specific Crop Ontologies and the reference ontologies- PO, TO, GO etc
PJ: Initial goal will be to work on improving and updating the TO
EA provided an overview of the Crop Ontology curation tool (http://www.cropontology.org/) and some background information about the ontologies and platform.
- Part of the Integrated Breeding Platform
- Common vocabularies are used to integrate data from breeders field book
- 18 crops represented in five sections:
- General Germplasm Ontology
- Phenotype and Trait Ontology
- Structural and Functional Genomic Ontology
- Location and Environmental Ontology
- Plant Anatomy & Development Ontology
Cassava Example:
- Based on OBO-Edit
- Excel-based template
- Visualized by the tool
Common Trait Classes (e.g.) : Maize Ontology (http://www.cropontology.org/ontology/CO_322/Maize)
- "Agronomic/Agronomical"
- Morphological
- Stress (Abiotic/Biotic Stresses)
- Phenological
- Quality
- Unit
Relations:
- is_a
- part _of
- method_of
- scale _of
- derived_from
2. Prioritizing the work on the species-specific Crop Ontologies- Rice, wheat and Maize
3. Transition to GitHub repository
4. Hiring at Bioversity, OSU and NYBG
5. Possible Ontology development workshop this spring
6. White paper on plant phenotyping standards