Planteome Image Annotation Working Group: Difference between revisions

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* Discussed possible attendance at May 14-15 Bisque developer workshop at U of Arizona
* Discussed possible attendance at May 14-15 Bisque developer workshop at U of Arizona


== Tech Dev Meeting: Tue, Feb 10, 1p PT ==
'''Attendees'''
*''Jaiswal Lab (OSU, BPP):'' Justin Preece
*''Todorovic Group (OSU, EECS):'' Yao Zhou, Xu Xu
'''Agenda'''
* Discussed approaches to functionality ahead of Bisque tech mtg
** Latency in Bisque's current round-trip approach to Graph Cuts segmentations - is it the round-trip or the graph cuts that takes so long? (JP thinks it's the round trip)
** IGC segmentation algorithm - DCU and Bisque implementations different? (don't know yet)
** Discuss implementation of segmentation module: general use-case
*** how to capture and transmit user input (foreground/background markup)
*** how to return segmentation results
*** emphasized importance of lean data communication, layered segments, overlap capabilities, undo/redo, how to store points sets and annotation data (in generic data structure terms)
* Project planning and timelines: define an iterative dev approach (multiple phases, with modest & clear initial goals)
** will flesh out in mtg w/ Bisque team


== Bisque Dev Env Setup Meeting: TBD ==
== Bisque Dev Env Setup Meeting: TBD ==

Revision as of 23:48, 11 February 2015

Goals and Objectives:

TBD

Participants

  • Jaiswal Lab (OSU, BPP): Justin Preece, Justin Elser
  • Todorovic Group (OSU, EECS): Sinisa Todorovic, Yao Zhou, Xu Xu
  • iPlant-Bisque Group (UCSB): Kris Kvilekval, Dmitri Federov, B.S. Manjunath

Image Annotation Working Group Meetings:

Initial Project Meeting: Jan 23, 2015

(Conf. call arranged and hosted on Zoom by Martha Narro, iPlant)

Attendees

  • Jaiswal Lab (OSU, BPP): Pankaj Jaiswal, Justin Preece
  • Todorovic Group (OSU, EECS): Sinisa Todorovic, Yao Zhou
  • iPlant-Bisque Group (UCSB): Kris Kvilekval, Dmitri Federov, B.S. Manjunath

Agenda

  • (Re-)Introductions
  • Planteome AISO/Bisque proposal review
  • Discussion of broad project objectives
  • Scheduled next meeting (will be a technical meeting)

Action Items

  • Justin send Yao the AISO documentation
  • Kris and Dmitry send Yao (and all) pointers to Bisque documentation and Google group.
  • Yao: begin to get familiar with Bisque and the AISO Java codebase.


AISO Demo (OSU Only): Tue, Jan 27, 1 PT

Attendees

  • Jaiswal Lab (OSU, BPP): Justin Preece
  • Todorovic Group (OSU, EECS): Sinisa Todorovic, Yao Zhou, Xu Xu

Agenda

  • Demos and technical introductions to AISO and codebase
  • Preliminary list of features desired to port to Bisque

Tech Demo Meeting: Thu, Jan 29, noon PT/1p MT

(Conf. call arranged and hosted on Zoom by Martha Narro, iPlant)

Attendees

  • Jaiswal Lab (OSU, BPP): Pankaj Jaiswal, Justin Preece
  • Todorovic Group (OSU, EECS): Sinisa Todorovic, Yao Zhou, Xu Xu
  • iPlant-Bisque Group (UCSB): Kris Kvilekval, Dmitri Federov

Agenda

  • Demos and technical introductions to Bisque development environment and AISO functionality
    • Second grad student developer (Xu Xu) added from Sinisa's group
  • Discuss IGC segmentation algorithm
  • Discuss implementation of a Bisque ontology service
  • Project planning and timelines
  • Discussed possible attendance at May 14-15 Bisque developer workshop at U of Arizona


Tech Dev Meeting: Tue, Feb 10, 1p PT

Attendees

  • Jaiswal Lab (OSU, BPP): Justin Preece
  • Todorovic Group (OSU, EECS): Yao Zhou, Xu Xu

Agenda

  • Discussed approaches to functionality ahead of Bisque tech mtg
    • Latency in Bisque's current round-trip approach to Graph Cuts segmentations - is it the round-trip or the graph cuts that takes so long? (JP thinks it's the round trip)
    • IGC segmentation algorithm - DCU and Bisque implementations different? (don't know yet)
    • Discuss implementation of segmentation module: general use-case
      • how to capture and transmit user input (foreground/background markup)
      • how to return segmentation results
      • emphasized importance of lean data communication, layered segments, overlap capabilities, undo/redo, how to store points sets and annotation data (in generic data structure terms)
  • Project planning and timelines: define an iterative dev approach (multiple phases, with modest & clear initial goals)
    • will flesh out in mtg w/ Bisque team

Bisque Dev Env Setup Meeting: TBD

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