Apr. 26th, 2016 Ontology Working Group Meeting: Difference between revisions

From Planteome.org
Jump to navigation Jump to search
(Created page with "=Planteome Ontology WG Zoom Meeting= * Date: Tuesday Apr. 26th, 2016 * Time: 8:15am PDT (GMT-7) ===OBA development- Chris Mungall=== * CM: If there is time I would like to...")
 
Line 2: Line 2:
* Date: Tuesday Apr. 26th, 2016
* Date: Tuesday Apr. 26th, 2016
* Time: 8:15am PDT (GMT-7)
* Time: 8:15am PDT (GMT-7)
* Connection details:  Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/762470789
* attendees:
[[File:xyz|thumbnail|xyz]]
[[File:xyz|thumbnail|xyz]]





Revision as of 15:49, 22 April 2016

Planteome Ontology WG Zoom Meeting

  • Date: Tuesday Apr. 26th, 2016
  • Time: 8:15am PDT (GMT-7)
File:Xyz
xyz
File:Xyz
xyz




OBA development- Chris Mungall

  • CM: If there is time I would like to walk through the procedure we use to develop OBA.
  • Part of this was covered in the tutorial on template-based ontology development, but we had to rush this part due to lack of time:

https://github.com/Planteome/protege-tutorial/tree/master/template-examples

  • For OBA, the source of the ontology is primarily in TSVs, found here:

https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/modules

  • The design patterns are specified here:

https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/patterns

  • Together these are used to build the ontology with equivalence axioms, with the entire ontology hierarchy being inferred automatically, e.g:

http://www.ebi.ac.uk/ols/beta/ontologies/oba/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBA_VT0000017