Feb 18th, 2016 Ontology Working Group Meeting: Difference between revisions

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* Display of relations
* Display of relations
''Currently, only the is_a, part_of and occurs_in relations are being displayed
''Currently, only the is_a, part_of and occurs_in relations are being displayed
* CM: its a priority for GO as well and they are working on it, although they are short-handed
* CM: its a priority for GO as well and they are working on it, although they have been short-handed
** Comments: the annotations should be moving correctly through the relations in the graph, even if they are not displayed
** Comments: the annotations should be moving correctly through the relations in the graph, even if they are not displayed



Revision as of 19:40, 18 February 2016

Planteome Ontology WG Zoom Meeting

  • Date: Thursday Feb 18th, 2016
  • Time: 8:15am PST (GMT-8)
  • Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/627445291
  • Attendees: AM, LC, CM, PJ, MAL, EA, GK, JE

Agenda:

Amigo 2.0 issues

  • Display of relations

Currently, only the is_a, part_of and occurs_in relations are being displayed

  • CM: its a priority for GO as well and they are working on it, although they have been short-handed
    • Comments: the annotations should be moving correctly through the relations in the graph, even if they are not displayed


    • display of CO terms with dash or colon (did not discuss this week)


Eg Cassava scale terms

  • Status of the Biocuration presentation and possible ICBO paper: Comparison of ontology mapping techniques to map traits (MAL)
    • bottleneck: needs of a collaborative revision of the design patterns
  • Revisons to the equivalence axioms
  • occurs_in, Inheres_in
  • how to describe "number_of"


    • agreement on a timeline
  • Display of the Crop Ontologies in amiGO2
    • crop specific names
  • Visit to IRRI: 7-11 March: TD revision and data annotation
  • Status of second year funding??