Jan 21st, 2016 Ontology Working Group Meeting: Difference between revisions
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=Report on PAG and the Workshop with CG Collaborators Monday Jan 11th= | =Report on PAG and the Workshop with CG Collaborators Monday Jan 11th= | ||
- http://planteome.org/outreach/workshops/PAG_2016 | - http://planteome.org/outreach/workshops/PAG_2016 | ||
'''Goals of the Meeting:''' | |||
* Introduce the Planteome project and launch Planteome 1.0 beta | |||
* Provide an update on the progress of the collaboration with the Crop Ontology to map crop-specific trait dictionaries to the Reference Trait Ontology | |||
* Provide a summary report and overview of the Planteome Curators Workshop, held Nov 2015 in Corvallis, OR | |||
* Engage Planteome collaborators and the plant genomics community by demonstrating use cases of data annotation for rice, cassava and lentils | |||
* Seek engagement of the plant genomics community through tools and applications to integrate into your workflow | |||
- 29 attendees (link to spreadsheet: [https://docs.google.com/spreadsheets/d/12Wl98Hy8LeQRZoDME2hDkqNgKqCjG89ymndJN84hP3I/edit?usp=docslist_api Participants list CO-Planteome Meeting PAG 2016]) | - 29 attendees (link to spreadsheet: [https://docs.google.com/spreadsheets/d/12Wl98Hy8LeQRZoDME2hDkqNgKqCjG89ymndJN84hP3I/edit?usp=docslist_api Participants list CO-Planteome Meeting PAG 2016]) | ||
Revision as of 19:25, 21 January 2016
Planteome Ontology WG Zoom Meeting
- Date: Thursday Jan. 21st, 2016
- Time: 8:15am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328
- Attendees: LC, AM, JE, PJ, EA, MAL, BS, GG.
File:Ontology WG Meeting 1-21-2016 video.mp4
File:Ontology WG Meeting 1-21-2016 audio.m4a
Report on PAG and the Workshop with CG Collaborators Monday Jan 11th
- http://planteome.org/outreach/workshops/PAG_2016
Goals of the Meeting:
- Introduce the Planteome project and launch Planteome 1.0 beta
- Provide an update on the progress of the collaboration with the Crop Ontology to map crop-specific trait dictionaries to the Reference Trait Ontology
- Provide a summary report and overview of the Planteome Curators Workshop, held Nov 2015 in Corvallis, OR
- Engage Planteome collaborators and the plant genomics community by demonstrating use cases of data annotation for rice, cassava and lentils
- Seek engagement of the plant genomics community through tools and applications to integrate into your workflow
- 29 attendees (link to spreadsheet: Participants list CO-Planteome Meeting PAG 2016)
- Comments and feedback?
Update on browsers
- Main Planteome website: http://planteome.org/
- Development site: http://dev.planteome.org/amigo
Issues being sorted out:
- Many of our relations are not being recognized and displayed in AmiGO 2.0 (https://github.com/Planteome/planteome-ontology-browsers/issues/20)
- only showing up- is_a, part_of and occurs_in
- this is an issues for the Gene Ontology as well
- Synonym scopes are not being displayed- all the broad, narrow, realted and exact synonyms are being lumped together- (https://github.com/Planteome/planteome-ontology-browsers/issues/17)