Nov 24th, 2015 Ontology Working Group Meeting: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
* Link to Agenda page: [https://docs.google.com/spreadsheets/d/1hwltFYdp3bGK_3VGEr9Ep5fOeAj1VC2ZThxrBGONrXQ/edit#gid=347493337&vpid=B5] | * Link to Agenda page: [https://docs.google.com/spreadsheets/d/1hwltFYdp3bGK_3VGEr9Ep5fOeAj1VC2ZThxrBGONrXQ/edit#gid=347493337&vpid=B5] | ||
==Attendees:== | |||
* Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU | * Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU | ||
* Barry Smith | * Barry Smith | ||
| Line 21: | Line 21: | ||
* Karthika Rajendra- Lentil ICARDA | * Karthika Rajendra- Lentil ICARDA | ||
* Rex Nelson- SoyBase | * Rex Nelson- SoyBase | ||
* Also Sinisa, Eugene, Botong | |||
==The overall goal is to enrich the Trait Ontology with terms that can be mapped to their equivalents in the various crop specific trait dictionaries.== | |||
==Workflow for test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)== | |||
* TD xls file - stay intact as a reference | * TD xls file - stay intact as a reference | ||
Revision as of 16:57, 24 November 2015
Planteome Ontology WG Zoom Meeting:
Date: Tuesday Nov. 24th, 2015 Time: 9am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/551476918
Attendees: - AM, MAL, Lol, PJ, JE ..... Regrets:
Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR
- Link to workshop page: http://planteome.org/curation_workshop_2015
- Link to Agenda page: [1]
Attendees:
- Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU
- Barry Smith
- Chris Mungall, Seth Carbon
- Marie-Angélique Laporte, Leo Valette, Elizabeth Arnaud (remotely)
- Vilma Hualla, Omar Benites CIP- Sweet Potato
- Agbona Afolabi- Cassava IITA
- Karthika Rajendra- Lentil ICARDA
- Rex Nelson- SoyBase
- Also Sinisa, Eugene, Botong
The overall goal is to enrich the Trait Ontology with terms that can be mapped to their equivalents in the various crop specific trait dictionaries.
Workflow for test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)
- TD xls file - stay intact as a reference
- Create a mapping spreadsheet- similar to “lentil-mapping-TO-CO_339.xls”- leaving the method and scale in and move to a tab in the google spreadsheet
- Owl file with proposed mappings- MAL will extract mapping from owl files- add to mapping spreadsheet on gsheet. These are the ones the curators selected
- MAL should put the computationally-derived mappings on the gsheet as well. That way we could review them
Curators should Open TO tracker Issues for terms they need added to TO: Template for missing terms or ones that need revision: Ref to CO term name and ID entity and attribute proposed TO term name Proposed parent in TO proposed TO definition
Optional information: link to CO term on CO website method and scale (is also on the gsheet) literature citation
Readme file on GitHub repo should be filled in with this information