Thursday Feb 6th, 2015: Difference between revisions
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=== A. Introductions, as some people have not met yet.=== | === A. Introductions, as some people have not met yet.=== | ||
''See details on last months page: [[Tuesday_Jan_6th,_2015]]'' | ''See details on last months page: [[Tuesday_Jan_6th,_2015]]'' | ||
====Barry Smith, University at Buffalo ==== | ====Barry Smith, University at Buffalo ==== | ||
| Line 43: | Line 35: | ||
* Key crops for the initial pilot cases: wheat, maize, rice | * Key crops for the initial pilot cases: wheat, maize, rice | ||
* Will also test alignment tools and algorithms | * Will also test alignment tools and algorithms | ||
=== B. General Comments and Updates:=== | |||
* Schedule will be: Monthly all hands meetings and the working groups will meet and report back to the group. | |||
* PJ will circulate final version of the proposal in a cleaned up format | |||
* Planteome-Internal Mailing list has been set up, this will be a useful way to share information among the key people in the team. | |||
* Planteome Wiki page has been set up with password protection | |||
* Ontology Repositories at GitHub- in progress | |||
=== C. :=== | === C. :=== | ||
Revision as of 00:21, 6 February 2015
Planteome All-Hands Monthly Meeting- Thursday Feb 6th, 2015
Who: PJ, EA, LC, JE, JP, DWS, GG, EZ, BS; Not available: ST, CM, JD
Agenda:
A. Introductions, as some people have not met yet.
See details on last months page: Tuesday_Jan_6th,_2015
Barry Smith, University at Buffalo
- Head of the OBO Foundry, Ontology Consultant
- Guidance on ontology development, consistent structure for PO and can be extended to other ontologies
- Setting standards for ontologies
Georgios Gkoutos, University of Aberystwyth, UK:
- Roles- As laid out in the proposal, (Fibi? was this referring to the ERA-CAPs proposal??)
- create logical definitions for plant phenotype ontology
- Expand Plant Phenoment , along with Phenotype RCN
- Developed out of http://phenomebrowser.net/index.html
- Contribute to expanding the reference ontologies as need
- PATO partially funded from this project, will need to address needs of the Planteome as we move forward
- Should have an acknowledgment on the PATO web site:http://wiki.obofoundry.org/wiki/index.php/PATO:Main_Page
- Will be hiring once the contracts are set up, somewhat of a lengthly procedure, will keep us posted
John Doonan, University of Aberystwyth, UK (not present on the call)
- Collaborator- Director National Plant Phenomics Centre for the UK
Elizabeth Arnaud: CGIAR
Crop Ontologies (http://www.cropontology.org/)
- Applied ontologies, crop specific ontologies and vocabularies for plant breeders communities
- Integrating descriptors for annotating germplasm=m and genetic experiments in the various CGIAR campuses
- List of 8-10 crops and or clades
- Build common references and cross links
- Contribute to development of the reference ontologies
- Outreach to users on CGIARS campuses
- Align concepts with TO, PO, GO, PTO and expand the list of traits
- Key crops for the initial pilot cases: wheat, maize, rice
- Will also test alignment tools and algorithms
B. General Comments and Updates:
- Schedule will be: Monthly all hands meetings and the working groups will meet and report back to the group.
- PJ will circulate final version of the proposal in a cleaned up format
- Planteome-Internal Mailing list has been set up, this will be a useful way to share information among the key people in the team.
- Planteome Wiki page has been set up with password protection
- Ontology Repositories at GitHub- in progress
C. :
- Progress on opening new Planteome-related positions in the Jaiswal Lab (software developer, curator)