Sept 27th, 2016 Ontology Working Group Meeting: Difference between revisions

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== Update on the Release ==
== Update on the Planteome Release 1.0, September 2016 ==
* TBA
* Planteome 1.0 database includes 67,272 ontology terms with links to approximately 1.9 million (M) bioentities (data objects) including proteins, genes, RNA transcripts and gene models, germplasm, and QTLs.
* Bioentities were often annotated to more than one ontology term, resulting in approximately 17.2M annotations.
* Annotated data was sourced from 24 unique database resources and covers 86 different plant taxa.
* Functional GO annotations are available for 62 species, which, for many of these species, the Planteome is a unique annotation resource.
* Available at http://planteome.org/ and also at the CyVerse Mirror site: http://draco.cyverse.org/amigo
 
* Link to http://planteome.org/blog


==Fall workshop planning==
==Fall workshop planning==

Revision as of 22:21, 26 September 2016

Planteome Ontology WG Zoom Meeting

  • Date: Tuesday Sept 27th, 2016
  • Time: 8:15am PDT (GMT-7)
  • Attendees:
  • Regrets:

Recordings:


Update on the Planteome Release 1.0, September 2016

  • Planteome 1.0 database includes 67,272 ontology terms with links to approximately 1.9 million (M) bioentities (data objects) including proteins, genes, RNA transcripts and gene models, germplasm, and QTLs.
  • Bioentities were often annotated to more than one ontology term, resulting in approximately 17.2M annotations.
  • Annotated data was sourced from 24 unique database resources and covers 86 different plant taxa.
  • Functional GO annotations are available for 62 species, which, for many of these species, the Planteome is a unique annotation resource.
  • Available at http://planteome.org/ and also at the CyVerse Mirror site: http://draco.cyverse.org/amigo

Fall workshop planning

Problem of lack of affordable housing at OSU this fall

Recent meetings and Conferences

NSF meeting Sept 7-8th, 2016

  • PJ attended, presented Planteome

GODAN Summit, New York City, Sept 15-16th, 2016

  • http://summit.godan.info/
  • Shared exhibit booth:
    • Planteome- PJ attended
    • Crop Ontology- Bioversity- EA
    • Gramene
    • Agronomy Ontology- Medha
    • IC3-FOODS at UC Davis for Food Ontology
    • Agricultural Nutrition and Technology Ontology (ANT)
  • Materials for booth are being collected in DropBox folder:
    • Project logo in high resolution
    • Short slide show (~ 5 slides) to show your project's impact and applications
    • Any handouts like brochures

Other items?

Scientific Advisory Board

  • List of possible people:
    • Sandy Knapp
    • Lynn Schriml (Lynn Schriml- Google Scholar)
    • Sarah Mathews - Was at Harvard, but she has moved to CSIRO in Canberra, Australia
    • Ruth Bastow
    • others?


  • LC will draft a letter and discuss with PJ
  • Goals review progress, help improve, recommend us to funders
  • Could have a meeting with them at the fall workshop

Upcoming Meetings and Workshops

4th International Plant Phenotyping Symposium, CIMMYT, December 13 – 15, 2016

  • International Maize and Wheat Improvement Center (CIMMYT)
  • El Batan, Texcoco, México (Near Mexico City)
  • Early bird registration deadline: October 16, 2016

Plant and Animal Genome 2017, Jan 14-18, 2017, San Diego, CA, USA

http://www.intlpag.org/

Phenome 2017, Feb 10th to 14th, 2017

http://www.phenome2017.org/#homepage

XIX International Botanical Congress, July 23-29, 2017, Shenzhen, China

Workshop proposal accepted

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