Apr. 5th, 2016 Ontology Working Group Meeting: Difference between revisions
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TBA.... | TBA.... | ||
==OBA development- Chris Mungall== | |||
==Other items:== | |||
=== Update on the plans for the Meeting in Montpellier, 9-13 May 2016=== | |||
===AmiGO2 issues continued.. === | |||
tba.. | |||
===OBA development- Chris Mungall=== | |||
* CM: If there is time I would like to walk through the procedure we use to develop OBA. | * CM: If there is time I would like to walk through the procedure we use to develop OBA. | ||
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* Together these are used to build the ontology with equivalence axioms, with the entire ontology hierarchy being inferred automatically, e.g: | * Together these are used to build the ontology with equivalence axioms, with the entire ontology hierarchy being inferred automatically, e.g: | ||
http://www.ebi.ac.uk/ols/beta/ontologies/oba/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBA_VT0000017 | http://www.ebi.ac.uk/ols/beta/ontologies/oba/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBA_VT0000017 | ||
= Upcoming Meetings and Workshops= | = Upcoming Meetings and Workshops= | ||
Revision as of 19:02, 15 March 2016
Planteome Ontology WG Zoom Meeting
- Date: Tuesday Mar. 29th, 2016
- Time: 8:15am PDT (GMT-7)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/762470789
Agenda
TBA....
Other items:
Update on the plans for the Meeting in Montpellier, 9-13 May 2016
AmiGO2 issues continued..
tba..
OBA development- Chris Mungall
- CM: If there is time I would like to walk through the procedure we use to develop OBA.
- Part of this was covered in the tutorial on template-based ontology development, but we had to rush this part due to lack of time:
https://github.com/Planteome/protege-tutorial/tree/master/template-examples
- For OBA, the source of the ontology is primarily in TSVs, found here:
https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/modules
- The design patterns are specified here:
https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/patterns
- Together these are used to build the ontology with equivalence axioms, with the entire ontology hierarchy being inferred automatically, e.g:
Upcoming Meetings and Workshops
Biocuration 2016, April 10th-14th, 2016; Geneva, Switzerland
- MAL is going
GARNet/Egenis Workshop: Integrating Large Data into Plant Science, April 21st-22nd 2016, Dartington Hall, Totnes, Devon
- Elizabeth and George are going, EA will present Planteome as part of her talk
Meeting in Montpellier, 9-13 May 2016
Link to tentative agenda/website: [1]
BioOntologies SIG of the Intelligent Systems for Molecular Biology (ISMB); July 8-12, 2016, Orlando, Florida
- Dates: July 8th and 9th, with July 9th being the “Phenotype Day”, focused on the systematic description of phenotypes.
- Short papers, up to 4 pages (will be published in JBMS)
- Poster abstracts, up to 1 page
- Flash updates, up to 1 page
7th International Conference on Biological Ontology and BioCreative 2016 Aug 1st to 4th, Corvallis, OR
- Link to program: ICBO + BioCreative Program
- Link to Easy Chair site: https://easychair.org/conferences/conference_info.cgi?a=10776589