Mar 1st, 2016 Ontology Working Group Meeting: Difference between revisions

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3. Update on AmiGO APIs
3. Update on AmiGO APIs- Justin Elser
 
==Visit to IRRI==
* Monday March 7th to Friday March 11th
* Goals: TD revision and data annotation- MAL, and Leo will be working on trait dictionary
* Austin- send me the contact info
* all 3 - should be contacting each other as a group
 
==Status of second year funding==
* Bioversity is getting impatient, PJ will follow up with NSF and find out
 
= Upcoming Meetings and Workshops=
==[http://www.phenotypercn.org/?page_id=2750 Phenotype RCN meeting February 26-28, 2016] ==
* PJ is going
 
==[https://www.isb-sib.ch/events/biocuration2016/home Biocuration 2016, April 10th-14th,2016; Geneva, Switzerland]==
* MAL is going
** [https://www.isb-sib.ch/events/biocuration2016/key-dates key dates]
** Abstract submitted: https://easychair.org/conferences/submission.cgi?a=10690939;submission=2641703
 
==[http://blog.garnetcommunity.org.uk/garnetegenis-workshop-integrating-large-data-plant-science-big-data-discovery/ GARNet/Egenis Workshop: Integrating Large Data into Plant Science], April 21st-22nd 2016, Dartington Hall, Totnes, Devon==
* Elizabeth and George are going, EA will present Planteome as part of her talk
 
== Meeting in Montpellier, May 2016- website??==
 
 
==[http://www.bio-ontologies.org.uk/call-for-participation BioOntologies SIG] of the [http://www.iscb.org/ismb2016 Intelligent Systems for Molecular Biology (ISMB)]; July 8-12, 2016, Orlando, Florida ==
* Dates: July 8th and 9th, with July 9th being the “Phenotype Day”, focused on the systematic description of phenotypes.
** Short papers, up to 4 pages (will be published in JBMS)
** Poster abstracts, up to 1 page
** Flash updates, up to 1 page
 
== [http://icbo.cgrb.oregonstate.edu/ 7th International Conference on Biological Ontology and BioCreative 2016] Aug 1st to 4th, Corvallis, OR==
* Link to program: [http://icbo.cgrb.oregonstate.edu/node/20 ICBO + BioCreative Program]
* Link to Easy Chair site: https://easychair.org/conferences/conference_info.cgi?a=10776589

Revision as of 19:51, 26 February 2016

Planteome Ontology WG Zoom Meeting

  • Date: Tuesday Mar. 1st, 2016
  • Time: 8:15am PST (GMT-8)
  • Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/762470789


  • Links to recordings:
  • Attendees:


Tentative Agenda: 1. recent updates on the TO

  • revisions to equivalence axioms- occurs_in and composition
  • Stem and culm
  • anther morphology traits, incl. anther number
  • biochemical branch

2. Changes and updates in the CO files

  • rice
  • cassava
  • lentil
  • newly mapped and added- wheat--- TBA


3. Update on AmiGO APIs- Justin Elser

Visit to IRRI

  • Monday March 7th to Friday March 11th
  • Goals: TD revision and data annotation- MAL, and Leo will be working on trait dictionary
  • Austin- send me the contact info
  • all 3 - should be contacting each other as a group

Status of second year funding

  • Bioversity is getting impatient, PJ will follow up with NSF and find out

Upcoming Meetings and Workshops

Phenotype RCN meeting February 26-28, 2016

  • PJ is going

Biocuration 2016, April 10th-14th,2016; Geneva, Switzerland

GARNet/Egenis Workshop: Integrating Large Data into Plant Science, April 21st-22nd 2016, Dartington Hall, Totnes, Devon

  • Elizabeth and George are going, EA will present Planteome as part of her talk

Meeting in Montpellier, May 2016- website??

BioOntologies SIG of the Intelligent Systems for Molecular Biology (ISMB); July 8-12, 2016, Orlando, Florida

  • Dates: July 8th and 9th, with July 9th being the “Phenotype Day”, focused on the systematic description of phenotypes.
    • Short papers, up to 4 pages (will be published in JBMS)
    • Poster abstracts, up to 1 page
    • Flash updates, up to 1 page

7th International Conference on Biological Ontology and BioCreative 2016 Aug 1st to 4th, Corvallis, OR

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