Jan 21st, 2016 Ontology Working Group Meeting: Difference between revisions
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[[File:Screen Shot 2016-01-15 at 4.10.18 PM.png|thumbnail|Biochemical branch TO]] | [[File:Screen Shot 2016-01-15 at 4.10.18 PM.png|thumbnail|Biochemical branch TO]] | ||
Previously mentioned [http://wiki.planteome.org/index.php/Dec_8th,_2015_Ontology_Working_Group_Meeting December 8th meeting] | |||
current upper level terms: | |||
*TO:0000283 biological process related trait | |||
*TO:0000282 enzymatic activity and protein content related trait | |||
*TO:0000281 metabolite content related trait | |||
*TO:0000465 mineral and ion content related trait | |||
*TO:0020080 stover organic matter digestability | |||
Suggest reducing to: | |||
*mineral and ion content trait | |||
*metabolite content trait | |||
*biological process trait | |||
[[File:biochemical branch TO.png]] | |||
== content/concentration/amount== | == content/concentration/amount== | ||
Revision as of 21:49, 20 January 2016
Planteome Ontology WG Zoom Meeting
- Date: Thursday Jan. 21st, 2016
- Time: 8:15am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328
- Attendees: TBA
- [[File:|thumb|]]
- [[File:|thumb| ]]
Report on the PAG Workshop with CG Collaborators Monday Jan 11th
- 29 attendees
Revisions to the biochemical trait TO:0000277 branch of the TO:
Revisions to the upper-level categories
Previously mentioned December 8th meeting
current upper level terms:
- TO:0000283 biological process related trait
- TO:0000282 enzymatic activity and protein content related trait
- TO:0000281 metabolite content related trait
- TO:0000465 mineral and ion content related trait
- TO:0020080 stover organic matter digestability
Suggest reducing to:
- mineral and ion content trait
- metabolite content trait
- biological process trait
content/concentration/amount
Biochemists definitions:
- concentration = amount/ VOLUME
- content = amount/MASS
PATO defs:
- ‘concentration of’ -A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
- 'amount' -The number of entities of this type that are part of the whole organism.
-Requested a revision of the 'amount' definition
- The number of entities of this type that are part of another entity.
Options:
- Merge content and concentration terms
- Add new parent term 'amount'. Make content and concentration terms children of this parent (see image)
