Jan 21st, 2016 Ontology Working Group Meeting: Difference between revisions

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=Planteome Ontology WG Zoom Meeting:=
Planteome Ontology WG Zoom Meeting
Date: Tuesday Jan. 19th, 2015
* Date: Tuesday Jan. 19th, 2015
Time: 8:15am PST (GMT-8)
* Time: 8:15am PST (GMT-8)
* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328
* Connection details:  '''Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328
'''
'''
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* [[File:|thumb|  ]]
* [[File:|thumb|  ]]


==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
=Report on the PAG Workshop with CG Collaborators Monday Jan 11th=
- 29 attendees
 
 
= Revisions to the biochemical trait TO:0000277 branch of the TO:=
 
==Revisions to the upper-level categories==





Revision as of 00:12, 16 January 2016

Planteome Ontology WG Zoom Meeting

  • Date: Tuesday Jan. 19th, 2015
  • Time: 8:15am PST (GMT-8)
  • Connection details: Join from PC, Mac, Linux, iOS or Android: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/757453328

  • Attendees: TBA
  • [[File:|thumb|]]
  • [[File:|thumb| ]]

Report on the PAG Workshop with CG Collaborators Monday Jan 11th

- 29 attendees


Revisions to the biochemical trait TO:0000277 branch of the TO:

Revisions to the upper-level categories

content/concentration/amount

Biochemists definitions:

  • concentration = amount/ VOLUME
  • content = amount/MASS

PATO defs:

  • ‘concentration of’ -A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
  • 'amount' -The number of entities of this type that are part of the whole organism.

-Requested a revision of the 'amount' definition

  • The number of entities of this type that are part of another entity.

Options:

  • Merge content and concentration terms
  • Add new parent term 'amount'. Make content and concentration terms children of this parent (see image)