Dec 16th, 2015 Ontology Working Group Meeting: Difference between revisions

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==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
==Planning for PAG Workshop with CG Collaborators Monday Jan 11th==
* Agenda
* PAG workshop (Monday Jan 11th 5:30- 7:30pm)
      
  - don't need to buy the AV equipment, will be provided
  - need a name
    "Planteome collaborators workshop, PAG 2016"
    - "working dinner"
      - dinner being figured out
    - not all curators coming, so it's not a "curator workshop"
  - need to finalize list of invited participants
    - few people have not confirmed
    - There is a breeding API meeting scheduled at the same time, but it might be moving.
    - want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.
 
* Agenda: 5:30-7:30
    - 28 people confirmed (allowances for ~10 more)
      - invite the plant phenotype project people (PPPP group) and the AgBioData group
    - see google doc for more precise
  - Dinner:  no tables, so what time to do dinner?
     - 7- so that discussion can follow.
      - set up dinner around 6:30
 
* APIs- still in a state of flux, but should be presentable by PAG
  - Summary descriptions on how to access them from planteome.org
 
* Look to get others involved in the enrichment of the TO and other reference ontologies.  Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
  - external involvement is key
 
* Add an outreach page, with links to community involvement tools (TermGenie)
    - also with links to meetings and workshops
    - and links to STEM stuff
 
==Updates on the data annotations: rice and cassava==
==Updates on the data annotations: rice and cassava==


Revision as of 20:53, 16 December 2015

Planteome Ontology WG Zoom Meeting:

Date: Wednesday Dec. 16th, 2015 Time: 8:15am PST (GMT-8)



Planning for PAG Workshop with CG Collaborators Monday Jan 11th

  • PAG workshop (Monday Jan 11th 5:30- 7:30pm)
 - don't need to buy the AV equipment, will be provided
 - need a name
   "Planteome collaborators workshop, PAG 2016"
   - "working dinner"
     - dinner being figured out
   - not all curators coming, so it's not a "curator workshop"
 - need to finalize list of invited participants
   - few people have not confirmed
   - There is a breeding API meeting scheduled at the same time, but it might be moving.
   - want to get the agenda out before xmas, so that people who confirmed early will get a quick reminder.
  • Agenda: 5:30-7:30
   - 28 people confirmed (allowances for ~10 more)
     - invite the plant phenotype project people (PPPP group) and the AgBioData group
   - see google doc for more precise 
 - Dinner:  no tables, so what time to do dinner?
   - 7- so that discussion can follow.
     - set up dinner around 6:30
  • APIs- still in a state of flux, but should be presentable by PAG
 - Summary descriptions on how to access them from planteome.org
  • Look to get others involved in the enrichment of the TO and other reference ontologies. Crowd sourcing some ideas about how to incorporate ontologies into normal plant science workflows.
 - external involvement is key
  • Add an outreach page, with links to community involvement tools (TermGenie)
   - also with links to meetings and workshops
   - and links to STEM stuff

Updates on the data annotations: rice and cassava

mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice==

Revisions to the Trait Ontology- biochemical branch and other changes

Next meeting Dec 29th, 2015

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