Dec 8th, 2015 Ontology Working Group Meeting: Difference between revisions
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* From BS: Related effort: [https://www.force11.org/ Force 11]/Force 2016- Open Science Initiative (Melissa Haendel, Maryanne Martone) | * From BS: Related effort: [https://www.force11.org/ Force 11]/Force 2016- Open Science Initiative (Melissa Haendel, Maryanne Martone) | ||
== Mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice: Overview of | == Mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice: == | ||
* Overview of Progress: Afola requested access so he could fill in the mappings to cassava | |||
* Link to mapping spreadsheet: [https://docs.google.com/spreadsheets/d/1iP6l_PEc0ESLHNpimkjJWFI-aezfJwQuNYZEzCLawJA/edit?usp=sharing CO Mappings to TO] | * Link to mapping spreadsheet: [https://docs.google.com/spreadsheets/d/1iP6l_PEc0ESLHNpimkjJWFI-aezfJwQuNYZEzCLawJA/edit?usp=sharing CO Mappings to TO] | ||
* | |||
[[File:Visualize.png|thumbnail|lentil plant height on the TO heirarchy]] | [[File:Visualize.png|thumbnail|lentil plant height on the TO heirarchy]] | ||
Revision as of 20:01, 8 December 2015
Planteome Ontology WG Zoom Meeting:
Date: Tuesday Dec. 8th, 2015 Time: 8:15am PST (GMT-8)
- Connection details: Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/600315375
- Attendees: LC, AM, PJ, DWS, BS
Updates
- DWS is working on a plant anatomy glossary- images can be linked to the PO terms in the digital version. Main interest in terms for spines, prickles, stipules, LC: should use the purl rather than the PO webpage or planteome page.
- Prickle- http://purl.obolibrary.org/obo/PO_0025169
- Spine- two options:
- spine leaf: http://purl.obolibrary.org/obo/PO_0025173
- spine stipule: http://purl.obolibrary.org/obo/PO_0025174
- Thorn: http://purl.obolibrary.org/obo/PO_0025172
- Stipule: http://purl.obolibrary.org/obo/PO_0020041 (see also spine stipule above)
- Leaflet: http://purl.obolibrary.org/obo/PO_0020049
- DWS recently attended a meeting with the Center for Open Science, Univ. of Virginia
- making experiments repeatable in ecology and psychology, what kind of metadata needs to be captured- using ontologies can help
- e.g. problem of repeatibility
- BS: developing an ontology for biological and clinical statistics- make pipeline repeatable
- in Evolutionary biology- all the steps are defined and documented
- From BS: Related effort: Force 11/Force 2016- Open Science Initiative (Melissa Haendel, Maryanne Martone)
Mapping of TO terms to trait dictionaries for lentil, soybean, cassava, rice:
- Overview of Progress: Afola requested access so he could fill in the mappings to cassava
- Link to mapping spreadsheet: CO Mappings to TO
From PJ: lentil tendrils image
Discussion about modified variables with scale info
Trait Ontology changes
Planteome Curator Workshop at PAG
Updates and Agenda (PAG 2016 Planteome-CO workshop)
Next Meeting: