Nov 24th, 2015 Ontology Working Group Meeting: Difference between revisions

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Planteome Ontology WG Zoom Meeting:
=Planteome Ontology WG Zoom Meeting:=
Date: Tuesday Nov. 24th, 2015
Date: Tuesday Nov. 24th, 2015
Time: 9am PST (GMT-8)
Time: 9am PST (GMT-8)
Line 8: Line 8:
Regrets:
Regrets:


== Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR ==
=Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR =
* Link to workshop page: http://planteome.org/curation_workshop_2015
* Link to Agenda page: [https://docs.google.com/spreadsheets/d/1hwltFYdp3bGK_3VGEr9Ep5fOeAj1VC2ZThxrBGONrXQ/edit#gid=347493337&vpid=B5]


Link to workshop page: http://planteome.org/curation_workshop_2015
===Attendees: ===
* Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU
* Barry Smith
* Chris Mungall, Seth Carbon
* Marie-Angélique Laporte, Leo Valette, Elizabeth Arnaud (remotely)
* Vilma Hualla, Omar Benites CIP- Sweet Potato
* Agbona Afolabi- Cassava IITA
* Karthika Rajendra- Lentil ICARDA
* Rex Nelson- SoyBase




  More details TBA
The overall goal is to enrich the Trait Ontology with terms that can be mapped to their equivalents in the various crop specific trait dictionaries.
 
 
===Workflow for test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)===
 
* TD xls file - stay intact as a reference
 
* Create a mapping spreadsheet- similar to “lentil-mapping-TO-CO_339.xls”- leaving the method and scale in and move to a tab in the google spreadsheet
 
* Owl file with proposed mappings- MAL will extract mapping from owl files- add to mapping spreadsheet on gsheet. These are the ones the curators selected
 
* MAL should put the computationally-derived mappings on the gsheet as well.  That way we could review them
 
Curators should Open TO tracker Issues for terms they need added to TO:
Template for missing terms or ones that need revision:
Ref to CO term name and ID
entity and attribute
proposed TO term name
Proposed parent in TO
proposed TO definition
 
Optional information:
link to CO term on CO website
method and scale (is also on the gsheet)
literature citation
 
Readme file on GitHub repo should be filled in with this information

Revision as of 16:56, 24 November 2015

Planteome Ontology WG Zoom Meeting:

Date: Tuesday Nov. 24th, 2015 Time: 9am PST (GMT-8)

Attendees: - AM, MAL, Lol, PJ, JE ..... Regrets:

Review of recent Planteome Developers' Workshop, Nov 9th-13th, 2015 Corvallis, OR

Attendees:

  • Laurel Cooper, Pankaj Jaiswal, Austin Meier, Justin Elser, Justin Preece- Planteome project, OSU
  • Barry Smith
  • Chris Mungall, Seth Carbon
  • Marie-Angélique Laporte, Leo Valette, Elizabeth Arnaud (remotely)
  • Vilma Hualla, Omar Benites CIP- Sweet Potato
  • Agbona Afolabi- Cassava IITA
  • Karthika Rajendra- Lentil ICARDA
  • Rex Nelson- SoyBase


The overall goal is to enrich the Trait Ontology with terms that can be mapped to their equivalents in the various crop specific trait dictionaries.


Workflow for test group- lentil (Karthica), Sweet Potato (Omar & Vilma), cassava (Aflola), banana (Leo), soybean (rex)

  • TD xls file - stay intact as a reference
  • Create a mapping spreadsheet- similar to “lentil-mapping-TO-CO_339.xls”- leaving the method and scale in and move to a tab in the google spreadsheet
  • Owl file with proposed mappings- MAL will extract mapping from owl files- add to mapping spreadsheet on gsheet. These are the ones the curators selected
  • MAL should put the computationally-derived mappings on the gsheet as well. That way we could review them

Curators should Open TO tracker Issues for terms they need added to TO: Template for missing terms or ones that need revision: Ref to CO term name and ID entity and attribute proposed TO term name Proposed parent in TO proposed TO definition

Optional information: link to CO term on CO website method and scale (is also on the gsheet) literature citation

Readme file on GitHub repo should be filled in with this information

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