Nov 14th, 2017 Ontology Working Group Meeting: Difference between revisions

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* Connection details:   
* Connection details:   
Hi there,
Planteome Project is inviting you to a scheduled Zoom meeting.
Topic: Planteome Ontology Working Group Meeting
Topic: Planteome Ontology Working Group Meeting
Time: Nov 14, 2017 8:15 AM PST
Time: Nov 14, 2017 8:15 AM PST
Line 12: Line 8:
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533
* Meeting Recordings:
* Meeting Recordings:
** [[File:Ontology WG meeting audio 11-14-17.m4a|thumb|Ontology WG meeting audio 11-14-17]]
** [[File:Ontology WG meeting video 11-14-17.mp4|thumbnail|Ontology_WG_meeting_video_11-14-17.mp4]]


=Agenda and Notes=   
=Agenda and Notes=   
==News:==
* Update on Changes to PECO- ''in progress''
 
==Presentation of PhenoArche data management by INRA==
* Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
* EA and MAL may be in Peru during the week - Lima is on eastern time zone
 
== Request for Revisions to aroma TO:0000087==
* From PJ; See tracker ([https://github.com/Planteome/plant-trait-ontology/issues/424 #424]) 
* Current definition: aroma ([http://dev.planteome.org/amigo/term/TO:0000087 TO:0000087]): The aroma of the cooked/uncooked grains.
* aroma (TO:0000087) has dual parentage:
** is_a fruit flavor trait (TO:0002694)
** is_a seed composition quality trait (TO:0000488)
*** ''This structure makes no sense.'' 
 
* Proposed
** Rename grain aroma trait (TO:0000087)- ''done''
** Move to be is_a grain quality trait TO:0000162 - ''done''
** Make it part_of: fruit flavor trait (TO:0002694) - ''done''
 
* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
* Aroma grouping term?, where to put it?
* ''don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain''
* Aroma is a physical object quality in PATO- PATO:0000058
 
==Next Release==
* Try for December befoer PAG
 
==Food Ontology meeting==
* Involvement of industry and tech, informatics
* Full spectrum of production
* Agvoice company Bruce Rasa http://www.agvoiceglobal.com/- Alexa technology,
 
* Food processing traits
* Organoleptic traits- Integrate into TO at a high level?


* Next IC Foods meeting in March in Dublin, Ireland
** http://foodontology.github.io/foodon/
** https://github.com/FoodOntology/foodon


* Ask Matthew Lange about coming to future meeting
* Phenoharmonis planned for mid-May 2018


== Upcoming Events ==
== Upcoming Events ==
* Phenoscape Hackathon in Dec  
* Phenoscape Hackathon in Dec- LC and AM will attend
* Plant and Animal Genome meeting January 2018  
* Plant and Animal Genome meeting January 2018
* ICBO 2018- in Corvallis, possibly end of August  
* Phenoharmonis planned for mid-May 2018
* ICBO 2018- in Corvallis, August 6-10th


Next meeting: Nov 28th
Next meeting: Dec 5th

Latest revision as of 21:07, 10 February 2018

  • Date: Tuesday Nov 14th, 2017
  • Time: 8:15am PST (GMT-8)
  • Connection details:

Topic: Planteome Ontology Working Group Meeting Time: Nov 14, 2017 8:15 AM PST

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533

Agenda and Notes

  • Update on Changes to PECO- in progress

Presentation of PhenoArche data management by INRA

  • Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
  • EA and MAL may be in Peru during the week - Lima is on eastern time zone

Request for Revisions to aroma TO:0000087

  • From PJ; See tracker (#424)
  • Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
  • aroma (TO:0000087) has dual parentage:
    • is_a fruit flavor trait (TO:0002694)
    • is_a seed composition quality trait (TO:0000488)
      • This structure makes no sense.
  • Proposed
    • Rename grain aroma trait (TO:0000087)- done
    • Move to be is_a grain quality trait TO:0000162 - done
    • Make it part_of: fruit flavor trait (TO:0002694) - done
  • Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
  • Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
  • Aroma grouping term?, where to put it?
  • don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain
  • Aroma is a physical object quality in PATO- PATO:0000058

Next Release

  • Try for December befoer PAG

Food Ontology meeting

  • Food processing traits
  • Organoleptic traits- Integrate into TO at a high level?
  • Ask Matthew Lange about coming to future meeting
  • Phenoharmonis planned for mid-May 2018

Upcoming Events

  • Phenoscape Hackathon in Dec- LC and AM will attend
  • Plant and Animal Genome meeting January 2018
  • Phenoharmonis planned for mid-May 2018
  • ICBO 2018- in Corvallis, August 6-10th

Next meeting: Dec 5th

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