Nov 14th, 2017 Ontology Working Group Meeting: Difference between revisions
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(Created page with "* Date: Tuesday Nov 14th, 2017 * Time: 8:15am PST (GMT-8) * Connection details: Hi there, Planteome Project is inviting you to a scheduled Zoom meeting. Topic: Planteom...") |
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* Connection details: | * Connection details: | ||
Topic: Planteome Ontology Working Group Meeting | |||
Time: Nov 14, 2017 8:15 AM PST | |||
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533 | |||
* Meeting Recordings: | |||
** [[File:Ontology WG meeting audio 11-14-17.m4a|thumb|Ontology WG meeting audio 11-14-17]] | |||
** [[File:Ontology WG meeting video 11-14-17.mp4|thumbnail|Ontology_WG_meeting_video_11-14-17.mp4]] | |||
=Agenda and Notes= | |||
* Update on Changes to PECO- ''in progress'' | |||
==Presentation of PhenoArche data management by INRA== | |||
* Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février. | |||
* EA and MAL may be in Peru during the week - Lima is on eastern time zone | |||
== Request for Revisions to aroma TO:0000087== | |||
* From PJ; See tracker ([https://github.com/Planteome/plant-trait-ontology/issues/424 #424]) | |||
* Current definition: aroma ([http://dev.planteome.org/amigo/term/TO:0000087 TO:0000087]): The aroma of the cooked/uncooked grains. | |||
* aroma (TO:0000087) has dual parentage: | |||
** is_a fruit flavor trait (TO:0002694) | |||
** is_a seed composition quality trait (TO:0000488) | |||
*** ''This structure makes no sense.'' | |||
* Proposed | |||
** Rename grain aroma trait (TO:0000087)- ''done'' | |||
** Move to be is_a grain quality trait TO:0000162 - ''done'' | |||
** Make it part_of: fruit flavor trait (TO:0002694) - ''done'' | |||
* Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma. | |||
* Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma | |||
* Aroma grouping term?, where to put it? | |||
* ''don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain'' | |||
* Aroma is a physical object quality in PATO- PATO:0000058 | |||
==Next Release== | |||
* Try for December befoer PAG | |||
* | ==Food Ontology meeting== | ||
* Involvement of industry and tech, informatics | |||
* Full spectrum of production | |||
* Agvoice company Bruce Rasa http://www.agvoiceglobal.com/- Alexa technology, | |||
* Food processing traits | |||
* Organoleptic traits- Integrate into TO at a high level? | |||
* Next IC Foods meeting in March in Dublin, Ireland | |||
** http://foodontology.github.io/foodon/ | |||
** https://github.com/FoodOntology/foodon | |||
* Ask Matthew Lange about coming to future meeting | |||
* Phenoharmonis planned for mid-May 2018 | |||
== Upcoming Events == | == Upcoming Events == | ||
* Phenoscape Hackathon in Dec | * Phenoscape Hackathon in Dec- LC and AM will attend | ||
* Plant and Animal Genome meeting January 2018 | * Plant and Animal Genome meeting January 2018 | ||
* ICBO 2018- in Corvallis, | * Phenoharmonis planned for mid-May 2018 | ||
* ICBO 2018- in Corvallis, August 6-10th | |||
Next meeting: | Next meeting: Dec 5th |
Latest revision as of 21:07, 10 February 2018
- Date: Tuesday Nov 14th, 2017
- Time: 8:15am PST (GMT-8)
- Connection details:
Topic: Planteome Ontology Working Group Meeting Time: Nov 14, 2017 8:15 AM PST
Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/324208533
- Meeting Recordings:
Agenda and Notes
- Update on Changes to PECO- in progress
Presentation of PhenoArche data management by INRA
- Francois and Pascal are fully booked before end of the year so they propose the following dates: 23, 25 janvier et 6 février.
- EA and MAL may be in Peru during the week - Lima is on eastern time zone
Request for Revisions to aroma TO:0000087
- From PJ; See tracker (#424)
- Current definition: aroma (TO:0000087): The aroma of the cooked/uncooked grains.
- aroma (TO:0000087) has dual parentage:
- is_a fruit flavor trait (TO:0002694)
- is_a seed composition quality trait (TO:0000488)
- This structure makes no sense.
- Proposed
- Rename grain aroma trait (TO:0000087)- done
- Move to be is_a grain quality trait TO:0000162 - done
- Make it part_of: fruit flavor trait (TO:0002694) - done
- Comment from PJ: Needs repositioned as IS_A quality trait with two children seed and fruit aroma. with rice scent /aroma being a child of seed aroma.
- Since rice grain is a caryopsis fruit (PO:0030104), rice grain aroma would be is_a fruit aroma
- Aroma grouping term?, where to put it?
- don't have to assert the aroma parent- since it will have the EA, it will be aroma inheres_in grain
- Aroma is a physical object quality in PATO- PATO:0000058
Next Release
- Try for December befoer PAG
Food Ontology meeting
- Involvement of industry and tech, informatics
- Full spectrum of production
- Agvoice company Bruce Rasa http://www.agvoiceglobal.com/- Alexa technology,
- Food processing traits
- Organoleptic traits- Integrate into TO at a high level?
- Next IC Foods meeting in March in Dublin, Ireland
- Ask Matthew Lange about coming to future meeting
- Phenoharmonis planned for mid-May 2018
Upcoming Events
- Phenoscape Hackathon in Dec- LC and AM will attend
- Plant and Animal Genome meeting January 2018
- Phenoharmonis planned for mid-May 2018
- ICBO 2018- in Corvallis, August 6-10th
Next meeting: Dec 5th